Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq9 215 6e-51 seq12 163 3e-35 seq8 84.2 3e-11 >seq9 Length=724727 Score = 215 bits (238), Expect = 6e-51 Identities = 477/711 (67%), Gaps = 21/711 (3%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| || ||||||||| | || |||| | |||||| ||||||| || || Sbjct 72489 AATTTTAACTTTGAAGAATTAGGTATAGGGGCGCTAGATGAAGAATTTAAAACAATATTT 72430 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || ||||||| ||| | ||| | | ||||| ||| ||||||| ||| Sbjct 72429 AGAAGAACATTTGCAAGTAGGATATATCCAAATTATATAATCAAACAATTAGGAATAAAA 72370 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| |||| || || ||||| |||| ||||| || ||||||||| |||| ||| || Sbjct 72369 CATGTAAAGGGTATGATATTATATGGCCCTCCCGGGACAGGTAAAACACTAATAGCTAGA 72310 Query 164572 TGCATTGCTCAAGCTTTTAAATCGCG--ACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | || | | || || | | || ||||||| ||||||| |||||| ||| Sbjct 72309 CAAATAGGTAAAACACTAAATGCGAGGGATCC--TAAAATTATTAATGGACCTGAAATAT 72252 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || |||||||||||| | || |||| ||| || | || || ||| | || || ||| Sbjct 72251 TAAATAAATATGTAGGTCAATCCGAAGAAAATATTCGTAATTTATTTAAAGATGCAGAAT 72192 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAG 164749 |||| | || || | || | | ||||||| ||||| | || ||||| |||| Sbjct 72191 TAGAATATAAACAATCTGGAGAAAATTCATTATTACATATTATTATATTAGATGAAATAG 72132 Query 164750 ATGCTCTTTGCAAAAAACGTGGTGATA----ATATTAT---TCA--------TGAT-GCA 164793 |||| |||| | || | ||| | || | | ||| |||| ||| Sbjct 72131 ATGCAATTTGTCGACAAAGAGGTAGTGGCGCATCTAGTGGGTCAGGGGTAAATGATAGCA 72072 Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 | || ||||| || | || ||||||||||| ||| | ||||||||||| ||| | Sbjct 72071 -TAGTCAATCAATTATTATCAAAAATAGATGGAGTAAACAGTTTAAATAATATATTATTA 72013 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | || ||||| || || |||||||| ||||| || || ||| |||| |||||||| Sbjct 72012 ATCGGGATGACAAATAGAATAGATTTAATAGATGAAGCATTGTTAAGACCAGGTCGATTT 71953 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973 ||||| | || |||||| |||||| | |||||||| | ||||||| ||||| || Sbjct 71952 GAATTACATATTGAAATATCATTACCAAATAAAGAAGGTAGAATTCAAATATTAAATATT 71893 Query 164974 CATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATA 165033 ||| || |||| | | ||| |||| | ||||| || || | || || Sbjct 71892 CATACAAAAAATATGAGACAAAATAATAAATTAAATAAGGATGTTAATATAGAAGAATTA 71833 Query 165034 GCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 |||| ||||| ||||| | |||||| ||| | || |||||||||||| Sbjct 71832 GCTGAAAAAACTCCAAATTTTTCTGGTGCAGAAATTGAAGGATTAGTAAGA 71782 >seq12 Length=816096 Score = 163 bits (180), Expect = 3e-35 Identities = 400/595 (67%), Gaps = 16/595 (3%) Strand=Plus/Minus Query 6817 TTTATAGCTTTTA-TATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 |||| |||||| | |||||| ||||| |||||||| || | ||| |||||||| Sbjct 648143 TTTA-AGCTTTCAATATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTC 648085 Query 6876 ACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935 | ||| | | | | |||| || || | |||||| |||| | ||| ||||| | Sbjct 648084 AGCTGCCTGTAAGTTACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAAT 648025 Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTG-ACAAGATAAAA 6994 ||| || || || || | || | ||| ||||||||||| ||| ||| ||||| Sbjct 648024 ATTGAATGGAACCCCAAGCCCTAAATCACAAGATCTTTGATA-CATAATACATGATAATT 647966 Query 6995 TATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTA 7054 | ||| | | ||||||||||||| || | |||||| |||||||| | ||||||| Sbjct 647965 TTCCGTCAAAAACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTA 647906 Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 ||| | |||||| ||| || | ||| |||||| | | |||| ||||||||| Sbjct 647905 AATCTTTTACATTCCATGCACACAAAATAATTCGTCTACAAGTAGGATCA-TTTTTAATT 647847 Query 7115 TTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 || ||||| ||| ||||||||| | || | ||| ||||||| ||| || | Sbjct 647846 AAATTTATAATATTTTTTAATTGATCAACTCCTTTGTCTTTATAATTATCATGCATATCT 647787 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 |||| | ||| |||||||| ||||||||||| |||||||| ||||| | |||| || Sbjct 647786 GTATATTCAGCACCAAAATGCCTCCATTGAAATCCATAAATTGGACCGAGATCATTAACT 647727 Query 7234 TCACGATG--ATTAAATCCTAATCGATTTAAATTAGATT---TTGATCCATAAGCATCCC 7288 || | ||| || | | ||| | || ||| | ||| ||| ||||| ||| |||| Sbjct 647726 TCTCTATGAAATAATTTTCTATT--ATCTAA---AAATTCCCTTGTTCCATTAGCTTCCC 647672 Query 7289 AAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATA 7348 | || ||| ||||| | | ||| | |||||| ||| | | ||||| | Sbjct 647671 ATATTCTTACGTTTTTTTCTAACAAAGTATTTCCATTTGTTTCCCCTCTTATAAACCACA 647612 Query 7349 AAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 | | |||||| | || || | ||| | | ||||||| || ||||| || || Sbjct 647611 ATAATTCTTCGATAATACCTCTTATAAATAATTTTTTTGTTGTTAATAATGGAAA 647557 >seq8 Length=590521 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| | ||| | ||||| | ||| ||| |||| || || |||||||| | Sbjct 432068 TAAAGTAAAAGTTCGATCTGTTCGAATCCCTCAAATTGGAGACAAGTTTGCAAGTAGACA 432127 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || |||||||| ||| |||||| | ||| | || |||||||| ||||| || Sbjct 432128 TGGCCAAAAAGGTACAATTGGTATAACATATAGAATGGAGGATATGCCATTTACATCTGA 432187 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| | | || ||| ||||||| |||||||||||| ||||| ||| ||||| Sbjct 432188 TGGTACATTTCCTGATATTATTATGAACCCACATGCTGTTCCATCTCGTATGAC 432241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595868439664800