Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq11 147 2e-30 >seq11 Length=923120 Score = 147 bits (162), Expect = 2e-30 Identities = 186/253 (74%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| |||| | | || || ||||| |||| || ||||| || || || || Sbjct 406295 TAATGTTTTTACAAAAATCTGCATACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGA 406236 Query 94816 TTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAA 94874 ||| ||||| | |||||||| | | || || || ||| || | |||||||| ||| Sbjct 406235 TTCTTTTTGAATATTATAATCAGATAAT-GTTCTGCCATCTTCTAATTGTTTTCCAGCAA 406177 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 | ||||||||||| ||||| || |||||||||||||| || | ||||||||| || || Sbjct 406176 AAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACAT 406117 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 | | ||| || | | ||||| |||| || |||||||||||||| | ||||| | Sbjct 406116 TTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTA 406057 Query 94995 CAAAGATCTGCAT 95007 |||| |||||||| Sbjct 406056 CAAAAATCTGCAT 406044 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCT 94839 |||||||| |||| || ||||| || || || ||||| ||||| | |||||||| | | Sbjct 406498 CCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 406439 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || || || ||| || | |||||||| |||| ||||||||||| ||||| || || Sbjct 406438 AAT-GTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGG 406380 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 |||||||||||| || | ||||||||| || || | | ||| || | | ||||| Sbjct 406379 AATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGAC 406320 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || |||||||||||||| | ||||| ||||| |||||||| Sbjct 406319 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 116 bits (128), Expect = 3e-21 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| |||| | | || || ||||| |||| || ||||| || || || || Sbjct 406067 TAATGTTTTTACAAAAATCTGCATACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGA 406008 Query 94816 TTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAA 94874 ||| ||||| | |||||||| | | || || || ||| || | |||||||| ||| Sbjct 406007 TTCTTTTTGAATATTATAATCAGATAAT-GTTCTGCCATCTTCTAATTGTTTTCCAGCAA 405949 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 | ||||||||||| ||||| || |||||||||||||| || | ||||||||| || || Sbjct 405948 AAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACAT 405889 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 | | ||| || | | ||||| |||| || || |||||||| Sbjct 405888 TTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATAGTTTTTCC 405843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288521460080