Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq14 80.6 4e-11 >seq14 Length=1633590 Score = 80.6 bits (88), Expect = 4e-11 Identities = 163/242 (67%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| |||||||| || || ||||| || | ||| | || | | ||||| | Sbjct 1544875 GAGATAACATTCAAGGAATTACAAAACCAGCAATAAGACGTTTAGCAAGAAGAGGTGGTG 1544934 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || ||| | ||||| || | |||||||| || | | || || || | || | Sbjct 1544935 TTAAACGTATTTCTGGTTTAATATATGAAGAAATAAGAGGGGTATTAAAAGTTTTTTTAG 1544994 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | ||| || | ||||| ||||| || ||| | || || ||||| Sbjct 1544995 AAAATGTCATTAAAGATTCTATTATGTATACTGAGCATGCCAAAAGAAAAACAGTCACAG 1545054 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | ||||| || || || |||| ||| | ||||| | | | ||||||||||| ||| Sbjct 1545055 CAATGGACATTGTTTACTCATTAAAAAGACAAGGAAGAACTTTATATGGTTTTGGTGGTT 1545114 Query 16698 AA 16699 || Sbjct 1545115 AA 1545116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074762961254