Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 1e-11 >seq6 Length=2450810 Score = 86.0 bits (94), Expect = 1e-11 Identities = 165/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 207566 TGATGGAGCAGAAGAAGTAGTCCAATGTGAAGAAGATCAATATATACTAGAAGCAGCCGA 207625 |||||||| |||| || | | |||||||||||||| |||||||| |||| || || Sbjct 608598 TGATGGAG-AGAAAAA--AATTGAATGTGAAGAAGATGAATATATATTAGACGCCAGTGA 608542 Query 207626 AGATGCTGG-TCTAGATATGCCTTCTTCTTGTAGAGCAGGAGCTTGTTCTGCTTGTTTAG 207684 | | || | | || |||||| | || |||| || ||||||| | ||| || Sbjct 608541 A-AGGCAAAATGTCGAATTGCCTTATAGCTGCAGAGGTGGTAGTTGTTCTACATGTGCAG 608483 Query 207685 GAAAAGTATTAGAAGGATCAGTTAATAATGAAGAACAATCATTCTTAGATGATGATCAAT 207744 |||| || | |||||| |||| |||||||||||||| | ||||| ||||| ||| Sbjct 608482 CAAAATTAATTGAAGGAGAAGTTGATAATGAAGAACAAAGCTATTTAGACGATGAGCAAC 608423 Query 207745 TAGAAGAAGGATGGTCACTTCTTTGT-GTTGCTATGCCACAGTCAGACTGTGTTAT 207799 || || || || ||||| ||| |||||| ||| | ||||| ||||| || Sbjct 608422 TAAAAAAAAAATATATTCTTCTATGTACATGCTATCCCA-AATCAGATTGTGTCAT 608368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807550374857680