Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 253 2e-62 >seq2 Length=1580255 Score = 253 bits (280), Expect = 2e-62 Identities = 626/940 (67%), Gaps = 23/940 (2%) Strand=Plus/Minus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| || || |||||| | | | ||||||| ||||| |||| Sbjct 1448374 ATATTTTCTTAAAAATCAGTATTCAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 1448318 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || ||||||||||| |||||||||||| || |||||||| ||||||| || Sbjct 1448317 ACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAA 1448258 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| ||| ||||||||||| ||| | ||| | |||| ||| || | Sbjct 1448257 GATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAA 1448198 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | || ||||||||| || |||||||| ||||||||| |||| | | ||||||| Sbjct 1448197 CATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCATT 1448138 Query 21356 CCGATCAATTTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTC 21414 || || || | ||| || | || || | ||| ||| | |||| || ||||| Sbjct 1448137 CCAATTAA-ATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTC 1448079 Query 21415 AACAATTATATTTATTATCCTAGATGTACTAGGGGGATACA----ATAATTGTTTAAACA 21470 || |||||| || | | | | || || || | |||| || | | Sbjct 1448078 TTTAACTATATT--TTGAACAACTTCTTCT--GGTAATTTATTTTCTAATAAACTATAAA 1448023 Query 21471 TCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530 | || || ||||||| ||| | ||||||||| || || |||||||||||| ||||| Sbjct 1448022 TTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATG 1447963 Query 21531 TTAAACC-GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGA 21588 ||||||| | ||| || | | ||||| |||||||| |||| | |||| | ||| Sbjct 1447962 TTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATTG-CACAAAAACTTCCACT 1447905 Query 21589 AAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTT 21648 ||| || || || || || ||| || || | || |||| | | ||| | | | Sbjct 1447904 AAATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAA---AGAATTTGT 1447848 Query 21649 ATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAAT 21708 ||| |||||||| | |||||| ||| || | ||| || || | ||||| Sbjct 1447847 ATCATTAATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAAT 1447788 Query 21709 AGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACT 21768 ||| | || | || |||| | | |||| | || ||| Sbjct 1447787 AGCATGGAATAAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACT 1447728 Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||| ||||||||||||||||||| | ||||| ||||| ||||| | |||| || Sbjct 1447727 ATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTC 1447668 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 || || || ||||| |||||| ||||| ||||||||||||||| Sbjct 1447667 AATTATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACT 1447608 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 || ||||||||||| || | || ||||||||||| | ||| || | ||||||||| Sbjct 1447607 TGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTC 1447548 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGC 22008 ||||| ||||| |||||||||| | |||||||| ||||||||| ||| ||| Sbjct 1447547 AAAATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGC 1447488 Query 22009 CTTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 ||||| || | | |||| | ||| |||||| || ||| Sbjct 1447487 TTTTTTGTAAAAATTCCAAACTTCAGGATATATAATAGGA 1447448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531897621892720