Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 374 1e-98 seq2 172 7e-38 >seq11 Length=923120 Score = 374 bits (414), Expect = 1e-98 Identities = 1113/1698 (66%), Gaps = 38/1698 (2%) Strand=Plus/Minus Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| |||||| | |||| ||| || ||||| | || || ||||||| |||||| Sbjct 449575 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 449516 Query 62196 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGA---- 62251 |||| ||||||||| | | || | || | || | | || | | | |||| Sbjct 449515 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 449457 Query 62252 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62310 |||| | || || ||| | | || || || |||| ||| || ||| || | Sbjct 449456 TCCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAA 449398 Query 62311 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370 | || | | | ||| ||||| || || ||||| ||| ||||| | | | || Sbjct 449397 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 449338 Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430 |||| ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 449337 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 449278 Query 62431 CAGTCGGCATAGGTGCCACCAATAAACT--ATTTCTAAGACCGTATGTTCTGATTTTATC 62488 | || ||||||||||| | || || | |||||| | || | | | || ||||| | Sbjct 449277 CTGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTT 449220 Query 62489 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTG 62545 ||||| ||||||| |||| | ||| | ||| Sbjct 449219 TTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTG 449160 Query 62546 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTC--CTTCTC 62602 || || || | || || | || | ||| ||||| || ||||| || | ||| | Sbjct 449159 TAATATTCCTTGGCTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGT- 449102 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 |||| |||| | | ||||| || | ||||| || || || || || | ||||| Sbjct 449101 -GCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATT 449043 Query 62663 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || |||| ||||| ||| | || ||||||| |||| || ||||| | || ||| Sbjct 449042 TAATTCTTTAGCTTCGTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 448985 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 |||||||| || || || || ||||||| ||| || ||||| || ||||||||||| | Sbjct 448984 AATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTA 448925 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 || || |||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 448924 ATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 448865 Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAAGGCA 62894 || | | ||| ||||| |||| | |||| | |||| | || ||| Sbjct 448864 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCA 448805 Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 | || |||| ||||||||| ||||| |||| || | |||| ||||| ||| Sbjct 448804 ATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAA 448745 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || | |||||||| || || ||||||||||||| ||||||| || || || ||| Sbjct 448744 CATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCA 448685 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074 || ||||| | || |||| |||||||||||| ||| || || || || ||| Sbjct 448684 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCAT 448625 Query 63075 ACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAAT 63134 | || | || | | | ||| | ||||| ||| ||| |||||| || Sbjct 448624 AAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 448565 Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCC-AATCCAGGACATTCATCCGGACACATCAA 63193 ||| || |||||||||||| ||| | || || |||||||||| |||||||| || Sbjct 448564 TTTTCAAATTCGTCTCCCCAAG-ATTCACTTAAACCTGGACATTCATTAGGACACATTAA 448506 Query 63194 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 | ||| | | | || || |||| ||||||||| | |||||| | ||||| ||| Sbjct 448505 AGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 448446 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 ||||| ||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 448445 AAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 448386 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | |||||| |||||||| || || | |||| || | | ||| | ||| ||| Sbjct 448385 AAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCC 448326 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 || ||||||| || || || || | |||| |||| || |||||||||| | ||| || Sbjct 448325 ACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATT 448266 Query 63434 TGATATACCATTGGTACCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGAT 63491 |||||||||||| || || |||| || | ||| | | |||| | | Sbjct 448265 TGATATACCATTAGTTCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCA 448208 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||||| || ||||| ||||| || || || ||| ||||||| || ||| | ||| Sbjct 448207 ACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATA 448148 Query 63552 CCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 || || || ||| |||| | ||| ||||||||| |||||||| | || Sbjct 448147 CCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGG 448089 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||||| | ||||||||| || || | ||| || || || |||||| ||| | || || Sbjct 448088 GGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATG 448029 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || || | |||| || | ||| | ||||||||| | || || | |||||| Sbjct 448028 ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAA 447969 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 | || ||||| | ||||| || || || || ||| || || || ||| ||| || Sbjct 447968 TAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAA 447909 Query 63791 AGTTTTAAAACCAAAATA 63808 ||||||||| |||||||| Sbjct 447908 AGTTTTAAATCCAAAATA 447891 >seq2 Length=1580255 Score = 172 bits (190), Expect = 7e-38 Identities = 599/928 (65%), Gaps = 19/928 (2%) Strand=Plus/Minus Query 32948 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAA--TGATTATCTTCTT-GAGACATAA 33004 |||| ||| |||||| ||| || |||||||| | || | ||||| ||| ||||| Sbjct 1448376 TTATATTTTCTTAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1448317 Query 33005 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33064 | || ||||| || || | || | |||||| || ||||| |||||||||| || | Sbjct 1448316 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1448257 Query 33065 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-- 33122 |||| ||||| ||| ||| ||||| || || | ||| ||| | | || || Sbjct 1448256 ATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAAC 1448197 Query 33123 -TTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCA 33181 ||| | |||||||| || || ||||| |||||| ||| | | |||||| Sbjct 1448196 ATTCT---AGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCA 1448140 Query 33182 TTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCAT 33241 |||| || | | | ||| | || || || |||| | || | || || | Sbjct 1448139 TTCCAATTAAATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTT 1448080 Query 33242 CTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC---AATAAATGTTTAAACA 33298 || | | ||| | ||| |||||| | || |||||| || | | Sbjct 1448079 CTTTAACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATAAA 1448023 Query 33299 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 33358 | || || ||||| || ||||| || ||||| ||||||| ||| || ||| | Sbjct 1448022 TTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATG 1447963 Query 33359 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAA 33418 | | || | | | | ||||||| |||||| || | | || |||| || Sbjct 1447962 TTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAA 1447903 Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT 33478 | || || |||||||| ||| || | || ||| || || || | |||| Sbjct 1447902 ATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAATTTGTATCAT 1447843 Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| || |||||| || || ||||||| || || |||| || |||| Sbjct 1447842 TAATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCAT 1447783 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 || | || |||| || |||||||| |||| ||||||| || | |||||| Sbjct 1447782 GGAATAAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATATG 1447723 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 |||| ||||| || ||||||| || || ||||| || || | | || || | | Sbjct 1447722 TTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTA 1447663 Query 33659 TCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | | ||||||| | ||||| || | ||||||||||| |||||||| ||||| || Sbjct 1447662 TTTCTACTTCTCTTAAAAAT--TTACTAGCCAAATTTTCTAATACTATTCCATCACTTGC 1447605 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 ||||||||| || || |||||||||||||||| |||||| | | ||| ||| | | Sbjct 1447604 TGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAA 1447545 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 ||| || | ||| | |||| ||| | |||||| ||||||||||||| || || || || Sbjct 1447544 ATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTT 1447485 Query 33837 TTTATACATGTTCCAGATGTCATAATAT 33864 ||| || | ||||| | ||| |||| Sbjct 1447484 TTTGTAAAAATTCCAAACTTCAGGATAT 1447457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943477890480