Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq11 129 6e-25 seq3 129 6e-25 >seq11 Length=923120 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||||||||||||||||||| | || || | || | ||| || | Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| ||| ||| || |||||||| || || || |||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406391 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 |||||| | |||| | || |||||| | ||||||| || ||| | | | || ||||| Sbjct 406392 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAG-AACATTATCTGATTATAA 406450 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| || | ||| |||| | ||| | |||||||| Sbjct 406451 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGG 406498 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||||||||||||||||||| | || || | || | ||| || | Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| ||| ||| || |||||||| || || || |||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406163 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 |||||| | |||| | || |||||| | ||||||| || ||| | | | || ||||| Sbjct 406164 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAG-AACATTATCTGATTATAA 406222 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| || | ||| |||| | ||| | ||||| || Sbjct 406223 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGG 406270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 26796 GGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAG 26855 |||||| | || || | || | ||| || ||| || || || | || ||| ||| Sbjct 405843 GGAAAAACTATAACTCTTGATGTCGAACCATCCGATACTATTGAAAATGTTAAAGCAAAA 405902 Query 26856 ATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAA 26915 ||| || |||||||| || || || |||||||||||| | |||| | || |||||| Sbjct 405903 ATTCAAGATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAACAA 405962 Query 26916 CTCGAAGATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCT 26974 | ||||||| || ||| | | | || ||||| |||||||||||||| || | ||| | Sbjct 405963 TTAGAAGATGGCAG-AACATTATCTGATTATAATATTCAAAAAGAATCAACCTTACATTT 406021 Query 26975 GGTCCTGAGACTTAGAGGAGG 26995 ||| | ||| | ||||| || Sbjct 406022 GGTTTTAAGATTAAGAGGTGG 406042 >seq3 Length=1724855 Score = 129 bits (142), Expect = 6e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | ||||||||||||||||| |||||| | ||||| | || | ||| || Sbjct 1545581 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1545522 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||| || || || | || ||| ||| ||| || |||||||| || || || || Sbjct 1545521 TCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGAC 1545462 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 ||||||||||| |||| | || |||||| | ||||||| |||| | | | | || || Sbjct 1545461 CAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAA-CTTTATCTGATTA 1545403 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 ||| |||||||||||||| || | ||| |||| Sbjct 1545402 TAATATTCAAAAAGAATCAACCTTACATTTGGT 1545370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478659539992160