Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 183 8e-41 seq12 174 4e-38 seq11 150 5e-31 >seq2 Length=1580255 Score = 183 bits (202), Expect = 8e-41 Identities = 569/861 (66%), Gaps = 31/861 (4%) Strand=Plus/Plus Query 22105 TACAAGAAAGCAGAAGCTTCCCTATGGGGTGTTTCCGAAATTGATATTTCCACTGATAAG 22164 ||||| ||||| |||||||| | ||| | | ||||||||| | || | |||| | Sbjct 1447479 TACAAAAAAGCTGAAGCTTCATTTTGGACAGCTGAAGAAATTGATTTATCAAGTGATTTG 1447538 Query 22165 ACGGATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTC 22224 | |||| |||| | | | ||| ||| |||||||||| ||| || || ||||||| Sbjct 1447539 AAAGATTTTGAAAAATTAAATGTAAATGAAAAACATTTTATAAAACATGTTTTAGCATTT 1447598 Query 22225 TTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCTGAAATT 22284 ||||| | || || ||||| || || ||| | | | ||| ||| | ||| | Sbjct 1447599 TTTGCAGCAAGTGATGGAATAGTATTAGAAAATTTGGCTAGTAAATTTTTAAGAGAAGTA 1447658 Query 22285 CAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAAT-GATGATTGAAAATGTTCACGC 22343 || || || | | || ||| | | ||||| | || |||||||| | || | Sbjct 1447659 GAAATAATTGAAGCAAAAAAATTTTATTCTTTTCAAATAGCTG-TTGAAAATATACATTC 1447717 Query 22344 GGAAACATAT--TCTATGATGCTACAGTCACTCGTAGAAGATAAAGACGAACAACGAAAC 22401 ||||||||| | ||| | | | | | | | || ||||| || | ||| ||| Sbjct 1447718 TGAAACATATAGTTTATTAATCGATAATTA-TATTA-AAGATGAAAAAGAAAGGTTAAAT 1447775 Query 22402 TTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGC-GCTGAA 22460 ||||||| || ||| | || | | |||| || ||||| ||| ||||| ||| || Sbjct 1447776 TTATTCCATGCTATTGAAAATATACCAGCAATAAAAAATAAAGCATTATGGGCTGCT-AA 1447834 Query 22461 ATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGC-TGTGGTTGAAG 22519 |||||| || || | ||| || || ||| | || | || ||| |||| | |||| Sbjct 1447835 ATGGATTAATGATACAAATTCTTTTGCTGAAAGAATTGTGGCTAATGCATGTG-TAGAAG 1447893 Query 22520 GCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTA--T 22577 | || || ||| |||| ||||||||||| |||||| | ||||||| ||| | | Sbjct 1447894 GTATATTATTTAGTGGAAGTTTTTGTGCAATTTTTTGGTTTAAAAAAC--AAAATAAATT 1447951 Query 22578 GCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTT 22637 | ||| |||| ||| ||||| ||||||||| ||||||| ||||| ||||| ||||| Sbjct 1447952 ACATGGTTTAACATTTAGTAATGAATTAATTAGCAGAGATGAAGGTCTACATACTGATTT 1448011 Query 22638 TGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGA 22697 | || | | ||| | | || | ||||| | ||| | ||| ||| | | Sbjct 1448012 TAATTGCTTAATTTATAG--TTTAT-TAGAAAATAAATTACCAGAAGAAGTTGTTCAAAA 1448068 Query 22698 TATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCA-GTAA 22756 ||| ||| | | ||||||||| | || | ||||||||| || | |||||| || | Sbjct 1448069 TATAGTTAAAGAAGCAGTTGAAGTAGAGAGATCATTTATTTGTGAATCTTTACCATGTGA 1448128 Query 22757 GTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTC 22816 | | ||||| || ||| | | ||| | ||||||| |||||||||| ||| | Sbjct 1448129 -TTTAATTGGAATGAATTCAAGACTTATGTCTCAATATATTGAATTTGTTGCTGATAGAT 1448187 Query 22817 TATTAATTTCACTCGGTTATGC-AAAG-----CATTATAACGTCGTTAATCCATTTGAAT 22870 || || | | || | | | |||| |||| ||| ||||||||| | | Sbjct 1448188 TACTAGAATGTTTAGGGTGTTCTAAAGTTTTTCATTCTAA------AAATCCATTTAATT 1448241 Query 22871 GGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAAT 22930 ||||||| | || || | ||||||| || |||||||| ||||||||||||| || | Sbjct 1448242 GGATGGATTTAATATCTTTACAAGGAAAAACAAATTTCTTTGAAAAAAGAGTTGCAGATT 1448301 Query 22931 ACCAAAAAGCAGGTGTTATGG 22951 | ||||| |||||||||||| Sbjct 1448302 ATCAAAAGTCAGGTGTTATGG 1448322 >seq12 Length=816096 Score = 174 bits (192), Expect = 4e-38 Identities = 330/478 (69%), Gaps = 6/478 (1%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACTTCTG 111371 |||||||| | | |||||||| | || || ||| || ||| |||||||| | || Sbjct 647555 ATTTTCCATTATTAACAACAAAAAAATTAT-TTATAAGAGGTATTATCGAAGAATTATTG 647613 Query 111372 TGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGC-AGCAAAAAATGTAAAAATTTG 111430 |||||||| | || ||||||| |||| | ||| || |||||| |||| ||| || Sbjct 647614 TGGTTTATAAGAGGGGAAACAAATGGAAAT-ACTTTGTTAGAAAAAAACGTAAGAATATG 647672 Query 111431 GGATGGAAATGGATCACGTGACTTTCTAGATTC-AGTTGGTCTTGTCGACAACGAAGAAG 111489 ||| | |||||| || | || ||| ||||| || | | || | | |||| Sbjct 647673 GGAAGCTAATGGAACAAGGGAATTTTTAGATAATAGAAAATTATTTC-ATAGAGAAGTTA 647731 Query 111490 GTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCA 111549 ||||||||| ||| |||| |||||||||||| | || |||||||| || || | | | Sbjct 647732 ATGATCTCGGTCCAATTTATGGATTTCAATGGAGGCATTTTGGTGCTGAATATACAGATA 647791 Query 111550 TGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTA 111609 |||| || ||| | | ||| |||||||||| | ||| | || || ||||| Sbjct 647792 TGCATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATATTATAAATTTAATTA 647851 Query 111610 AGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAA 111669 | || | || |||| | | || |||||| || |||||||||| ||| | || || Sbjct 647852 AAAATGATCCTACTTGTAGACGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATC 647911 Query 111670 AAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTT 111729 |||||||| | || || |||||| || | || || |||||||| ||||| | | | Sbjct 647912 AAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGACGGAAAATTAT 647971 Query 111730 CATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787 |||| |||||||| ||||| |||| | || ||||| ||||| || |||||||| Sbjct 647972 CATGTATTATGTATCAAAGATCTTGTGATTTAGGGCTTGGGGTTCCATTCAATATTGC 648029 >seq11 Length=923120 Score = 150 bits (166), Expect = 5e-31 Identities = 579/902 (64%), Gaps = 18/902 (2%) Strand=Plus/Plus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| ||| || | || ||| || ||| || || ||| | | Sbjct 447885 TATGATTATTTTGGATTTAAAACTTTAGAACGATCATATTTATTACGAATTAATAATAAA 447944 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| ||||||| || || ||| | |||||| | || | ||||| || ||| ||| Sbjct 447945 ATTATTGAACGTCCTCAACATTTATTAATGAGAGTGTCAATTGGAATTCATATAGATGAT 448004 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCC 363558 |||| || | ||||||||| | | ||| ||| || |||| || || Sbjct 448005 CTTGAAAAAGCTTTAGAAACATATCA---TTTAATGTCTCAAAAATATTTCACACATGCT 448061 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || || ||| | | ||| | ||||| | || || ||||| ||||| ||||| || Sbjct 448062 ACACCCACATTATTTAATTCAGGAACCCCACGACCGCAAATGTCATCTTGTTTTCTATTA 448121 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 ||||| ||||| || || ||||| ||||| ||| | || | |||||| | ||| Sbjct 448122 TCTATGAAATCAGATTCTATTGAAGGTATATTTGAAACATTAAAACAATGTGCTTTGATT 448181 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || | |||||||| || || || | | || || | | | ||||| ||| Sbjct 448182 AGTAAAACAGCAGGCGGCATAGGAGTTGCTGTACAAGATATAAGAGGTCAGAATTCTTAT 448241 Query 363739 ATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| | || || | || ||| || ||||| | ||||| ||| | | || ||| | | Sbjct 448242 ATTAGAGGAACTAATGGTATA-TCAAATGGTTTAGTTCCAATGTTAAGGGTTTTTAATGA 448300 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 ||| || ||||| || || || |||||||| || | ||||| | ||||| | ||| | Sbjct 448301 TACGGCAAGGTATGTAGATCAAGGTGGAGGGAAAAGAAAAGGATCTTTTGCAGTATATAT 448360 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGA 363917 ||||| ||| | ||||||||||| ||| | || | | ||||| || ||||| Sbjct 448361 AGAGCCATGGCATTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGA 448420 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 ||||| | || || ||| | || ||||| ||||||| |||| |||||||| | Sbjct 448421 AGAATTAAGAGCTCGAGATTTATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAG 448480 Query 363978 CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA 364037 || | | | ||| || ||| | | | || || | |||||||||||| | || Sbjct 448481 AGTAAAAGAAAATAAAAACTGGACTTTAATGTGTCCTAATGAATGTCCAGGTTTAAGTGA 448540 Query 364038 TGTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGAATCGGAGGGAAA---G 364092 ||||| ||||| | || | | ||||| ||| |||||| || | ||| Sbjct 448541 ATCTTGGGGAGACGAATTTGAAAAGTTATATAC--AAAATATGAA---GAAGAAAATTTA 448595 Query 364093 GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 | || ||| | | ||||| | |||||||||| || | | || ||||| Sbjct 448596 GGAAAAAAAACAGTCCTTGCACAAGATTTATGGTTTGCTATATTACAAAGTCAAATTGAA 448655 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 || || ||| |||||||| || |||||| | ||||| || || || || | | Sbjct 448656 ACTGGTGTACCATATATGTTATATAAAGATGCATGCAATTCTAAATCTAATCAAAAAAAT 448715 Query 364213 CTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC 364272 | || |||||| | || ||| ||||| || || |||||||||||| | || || Sbjct 448716 TTAGGAACAATTAAATGTAGTAACTTATGTTGTGAAATAATTGAATACACCTCACCTGAT 448775 Query 364273 GA 364274 || Sbjct 448776 GA 448777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345617773796