Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq11 143 2e-29 seq3 120 3e-22 >seq11 Length=923120 Score = 143 bits (158), Expect = 2e-29 Identities = 178/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||||||||||||||||||| | || || | || ||||| | | Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| ||| ||| || |||||||| || || || |||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406391 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || ||| | |||| | || || ||| | ||||||| ||| ||| | | | |||||||| Sbjct 406392 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAG-AACATTATCTGATTATAA 406450 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGATT 24229 |||||||||||||| || | ||||| || |||||||| |||||||| |||| ||| Sbjct 406451 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGGTTGCTAATCATT 406510 Query 24230 C 24230 | Sbjct 406511 C 406511 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||||||||||||||||||| | || || | || ||||| | | Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| ||| ||| || |||||||| || || || |||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406163 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || ||| | |||| | || || ||| | ||||||| ||| ||| | | | |||||||| Sbjct 406164 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAG-AACATTATCTGATTATAA 406222 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || | ||||| || |||||||| ||||| || Sbjct 406223 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGG 406270 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAG 24077 |||||| | || || | || ||||| | ||| || || || | || ||| ||| Sbjct 405843 GGAAAAACTATAACTCTTGATGTCGAACCATCCGATACTATTGAAAATGTTAAAGCAAAA 405902 Query 24078 ATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAA 24137 ||| || |||||||| || || || |||||||| ||| | |||| | || || ||| Sbjct 405903 ATTCAAGATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAACAA 405962 Query 24138 CTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 | ||||||| ||||| | | | | |||||||| |||||||||||||| || | ||||| Sbjct 405963 TTAGAAGATGGCAGAA-CATTATCTGATTATAATATTCAAAAAGAATCAACCTTACATTT 406021 Query 24197 AGTGTTAAGATTGAGAGGAGG 24217 || |||||||| ||||| || Sbjct 406022 GGTTTTAAGATTAAGAGGTGG 406042 >seq3 Length=1724855 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||||||||||||||| |||||| | || || | || || || | Sbjct 1545581 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1545522 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||| || || || | || ||| ||| ||| || |||||||| || || || || Sbjct 1545521 TCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGAC 1545462 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTA 24166 ||||| ||||| |||| | || || ||| | ||||||| ||||| | | | | ||||| Sbjct 1545461 CAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAA-CTTTATCTGATTA 1545403 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| |||||||||||||| || | ||||| || Sbjct 1545402 TAATATTCAAAAAGAATCAACCTTACATTTGGT 1545370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933495354090