Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq11 149 5e-31 seq3 134 1e-26 >seq11 Length=923120 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| ||||| | || ||||||||||| || | || || | | Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | | || ||| ||||||| ||||||||||| | ||| |||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406391 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | |||| ||| || |||||||||||||||| || ||| | | |||||||| Sbjct 406392 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406451 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || ||||| |||| || ||||| ||||||| Sbjct 406452 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGG 406498 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| ||||| | || ||||||||||| || | || || | | Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | | || ||| ||||||| ||||||||||| | ||| |||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406163 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | |||| ||| || |||||||||||||||| || ||| | | |||||||| Sbjct 406164 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406223 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || ||||| |||| || ||||| |||| || Sbjct 406224 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGG 406270 Score = 123 bits (136), Expect = 2e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| ||| ||| | | || ||| ||||||| ||||||||||| | ||| |||||| Sbjct 405875 CGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCA 405934 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| ||| || |||||||||||||||| || ||| | | |||||||| Sbjct 405935 ACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAA 405994 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || ||||| |||| || ||||| |||| || Sbjct 405995 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGG 406042 >seq3 Length=1724855 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| ||||| ||||| | || |||||||| || || | || || | Sbjct 1545581 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1545522 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| ||| ||| | | || ||| ||||||| ||||||||||| | ||| ||| Sbjct 1545521 TCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGAC 1545462 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || |||||||| |||| ||| || |||||||||||||||| || ||| | | |||||| Sbjct 1545461 CAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTAT 1545402 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGT 115494 || ||||||||||| || || ||||| |||| Sbjct 1545401 AATATTCAAAAAGAATCAACCTTACATTTGGT 1545370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425341522105360