Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-13 >seq11 Length=923120 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 || ||||||| ||| || || |||||||| || ||||| | | ||| | || | || || Sbjct 406252 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCA-TCTTC 406194 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || || | ||||| | || || || || || || |||||||| || | Sbjct 406193 TAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCT-T 406135 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| ||||| | | | || | |||||||| | |||| || | || | ||||| Sbjct 406134 GAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTT 406075 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || |||| |||||||| ||||||||||| Sbjct 406074 TTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 || ||||||| ||| || || |||||||| || ||||| | | ||| | || | || || Sbjct 406480 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCA-TCTTC 406422 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || || | ||||| | || || || || || || |||||||| || | Sbjct 406421 TAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCT-T 406363 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| ||||| | | | || | |||||||| | |||| || | || | ||||| Sbjct 406362 GAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTT 406303 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || |||| |||||||| ||||||||||| Sbjct 406302 TTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009979723520