Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq367 127 1e-24 seq11 127 1e-24 seq10 127 1e-24 seq4 127 1e-24 seq3 111 1e-19 >seq367 Length=1022 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 220 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 161 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 160 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 126 >seq11 Length=923120 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 869669 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 869610 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 869609 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 869575 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||||| || | || |||||||| ||| || | || ||||||||||| |||||| Sbjct 406272 TACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGAT-TCTTTTTGAATATTATAATCA 406214 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || || | | || |||||||||||||| ||||| |||| | ||||||||| | | Sbjct 406213 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGG 406154 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | |||||||| || ||||||| || ||||| | | |||||| ||| Sbjct 406153 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCG 406094 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || ||||| || || || ||||| || || |||||||| Sbjct 406093 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||| ||||| || | || |||||||| ||| || | || ||||||||||| ||||||| Sbjct 406499 ACCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGAT-TCTTTTTGAATATTATAATCAG 406441 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | | || |||||||||||||| ||||| |||| | ||||||||| | || Sbjct 406440 ATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGG 406381 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || ||||||| || ||||| | | |||||| ||| | Sbjct 406380 GAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGA 406321 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || || || ||||| || || |||||||| Sbjct 406320 CATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 102 bits (112), Expect = 5e-17 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||||| || | || |||||||| ||| || | || ||||||||||| |||||| Sbjct 406044 TACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGAT-TCTTTTTGAATATTATAATCA 405986 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || || | | || |||||||||||||| ||||| |||| | ||||||||| | | Sbjct 405985 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGG 405926 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | |||||||| || ||||||| || ||||| | | |||||| ||| Sbjct 405925 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCG 405866 Query 38268 ACTTCTAATGTAATAGTTTTACC 38290 || || | || |||||||| || Sbjct 405865 ACATCAAGAGTTATAGTTTTTCC 405843 >seq10 Length=919979 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 776752 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 776693 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 776692 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 776658 >seq4 Length=1767061 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 1709201 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 1709142 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1709141 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1709107 >seq3 Length=1724855 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38109 ACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||||| ||| || | || ||||||||||| |||||||| ||| | | || || Sbjct 1545370 ACCAAATGTAAGGTTGAT-TCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTC 1545428 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 |||||||||||| ||||| ||||| | |||||| || | ||| | |||||||| || Sbjct 1545429 TAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTG 1545488 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||||||| || ||||| | | |||||| |||||| || | || || ||||| Sbjct 1545489 AATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTT 1545548 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || ||||| || || || ||||| || Sbjct 1545549 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1545581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945248723218