Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11 392 4e-104 seq2 190 3e-43 >seq11 Length=923120 Score = 392 bits (434), Expect = 4e-104 Identities = 1117/1698 (66%), Gaps = 38/1698 (2%) Strand=Plus/Minus Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| |||||| | |||| ||| || ||||| | ||||| ||||||| |||||| Sbjct 449575 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 449516 Query 62051 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGA---- 62106 |||| ||||||||| | | || | || | || | | || | | | |||| Sbjct 449515 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 449457 Query 62107 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62165 |||| | || || ||| | | || || || |||| ||| || ||| || | Sbjct 449456 TCCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAA 449398 Query 62166 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62225 | || | | | ||| ||||| || || ||||| ||| ||||| | | | || Sbjct 449397 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 449338 Query 62226 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62285 |||| ||||| ||||| ||||| | ||| |||||||||||||||||||| | |||||| | Sbjct 449337 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 449278 Query 62286 CAGTCGGCATAGGTGCCACCAATAAACT--ATTTCTAAGACCGTATGTTCTGATTTTATC 62343 | || ||||||||||| | || || | |||||| | || | | | || ||||| | Sbjct 449277 CTGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTT 449220 Query 62344 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTG 62400 ||||| ||||||| |||| | ||| | ||| Sbjct 449219 TTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTG 449160 Query 62401 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTC--CTTCTC 62457 || || || | || || | || | ||| ||||| || ||||| || | ||| | Sbjct 449159 TAATATTCCTTGGCTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGT- 449102 Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517 |||| |||| | | ||||| || | ||||| || || || || || | ||||| Sbjct 449101 -GCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATT 449043 Query 62518 TAGATCTTGCGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 62575 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 449042 TAATTCTTTAGCTTCGTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 448985 Query 62576 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62635 |||||||| || || || || ||||||| ||| || ||||| || ||||||||||| | Sbjct 448984 AATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTA 448925 Query 62636 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62695 || || |||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 448924 ATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 448865 Query 62696 TCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAATGCA 62749 || | | ||| ||||| |||| | |||| | |||| | |||||| Sbjct 448864 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCA 448805 Query 62750 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62809 | || |||| ||||||||| ||||| |||| || | |||| ||||| ||| Sbjct 448804 ATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAA 448745 Query 62810 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 62869 || | |||||||| || || ||||||||||||| ||||||| || || || ||| Sbjct 448744 CATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCA 448685 Query 62870 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 62929 || ||||| | || |||| |||||||||||| ||| || || || || ||| Sbjct 448684 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCAT 448625 Query 62930 ACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 62989 | || | || | | | ||| | |||||| ||| ||| |||||| || Sbjct 448624 AAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 448565 Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTC-CAGTCCAGGACATTCATCCGGACACATCAA 63048 ||| || |||||||||| || ||| | | || |||||||||| |||||||| || Sbjct 448564 TTTTCAAATTCGTCTCCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACATTAA 448506 Query 63049 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 | ||| | | | || || |||| ||||||||| | |||||| | ||||| ||| Sbjct 448505 AGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 448446 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 ||||| ||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 448445 AAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 448386 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | |||||| |||||||| || || | |||| || | | ||| | ||| ||| Sbjct 448385 AAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCC 448326 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 || ||||||| || || || || | |||| |||| || |||||||||| | |||||| Sbjct 448325 ACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATT 448266 Query 63289 GGATGTACCATTGGTCCCTGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGAT 63346 ||| ||||||| || ||| |||| || | ||| | | |||| | | Sbjct 448265 TGATATACCATTAGTTCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCA 448208 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||||| || ||||| ||||| || || || ||| ||||||| || ||| | || Sbjct 448207 ACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATA 448148 Query 63407 CCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 || || ||| ||| |||| | ||| ||||||||| |||||||| | || Sbjct 448147 CCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGG 448089 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||||| | ||||||||| || || | ||| || || || |||||| ||| | || || Sbjct 448088 GGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATG 448029 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || || | |||| || | ||| | ||||||||| | || || | |||||| Sbjct 448028 ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAA 447969 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 | || ||||| | ||||| || || || || ||| || || || ||| ||| || Sbjct 447968 TAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAA 447909 Query 63646 AGTTTTAAAACCAAAATA 63663 ||||||||| |||||||| Sbjct 447908 AGTTTTAAATCCAAAATA 447891 >seq2 Length=1580255 Score = 190 bits (210), Expect = 3e-43 Identities = 631/967 (65%), Gaps = 26/967 (3%) Strand=Plus/Minus Query 32305 TTATGTTTCTTTAAAAGTCAACATCTAGAGAAAAA--TGATTGTCTTCTT-GAGACATAA 32361 |||| ||| |||||| ||| || | |||||| | || | ||||| ||| ||||| Sbjct 1448376 TTATATTTTCTTAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1448317 Query 32362 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 32421 | || ||||| || || | || | |||||| || ||||| ||||| |||| ||| | Sbjct 1448316 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1448257 Query 32422 ATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAA-- 32479 |||| ||||| ||| |||||||| || || | ||| ||| | | || || Sbjct 1448256 ATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAAC 1448197 Query 32480 -TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 32538 ||| | |||||||| || |||||||| |||||| ||| | | |||||| Sbjct 1448196 ATTCT---AGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCA 1448140 Query 32539 TTCCTATAAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596 |||| || | | | ||| |||| |||| || |||| | || | || || Sbjct 1448139 TTCCAATTAAATCACATGGTAAAGATTCACA--AATAAATGATCTCTCTACTTCAACTGC 1448082 Query 32597 GTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATAC---AATAAATGTTTA 32651 ||| ||| | || || || || |||||| | || |||||| || Sbjct 1448081 TTCT-TTA-ACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TA 1448027 Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 | || || || ||||| |||||||| || ||||| ||||||||||| || | Sbjct 1448026 TAAATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTA 1447967 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | || | | | | ||||||| |||||| || | ||| |||| Sbjct 1447966 AATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCA 1447907 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 ||| || || |||||||| ||| || | || ||| || || || | Sbjct 1447906 CTAAATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAATTTGTA 1447847 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 |||| ||||| || |||||| || || ||||||| || || | || ||| Sbjct 1447846 TCATTAATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATA 1447787 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 |||| || | || |||| || |||||||| ||| |||| || || | |||| Sbjct 1447786 GCATGGAATAAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTA 1447727 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 || |||| ||||| || ||||||| || |||||||| || || | | || || Sbjct 1447726 TATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCA 1447667 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACT 33070 | || | ||||||| | ||||| | || || |||||||| |||||||| ||||| Sbjct 1447666 ATTATTTCTACTTCTCTTAAAAATT-TACTAGCCAAATTTTCTAATACTATTCCATCACT 1447608 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33130 ||||||||||| || || |||||||||||||||| |||||| | | ||| ||| | Sbjct 1447607 TGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTC 1447548 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || || Sbjct 1447547 AAAATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGC 1447488 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 ||||| || | |||||| | ||| ||||| ||| ||| | |||||||||| | Sbjct 1447487 TTTTTTGTAAAAATTCCAAACTTCAGGATATATAATAGGATGCAATGTAAATCTATTT-G 1447429 Query 33251 ATTTTTT 33257 ||| ||| Sbjct 1447428 ATTCTTT 1447422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628214048800