Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3 141 8e-29 seq11 136 3e-27 >seq3 Length=1724855 Score = 141 bits (156), Expect = 8e-29 Identities = 161/213 (76%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || || ||||| ||| | ||||| | || || || | || Sbjct 1545579 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1545520 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || | || ||||||||| ||| || |||||||| ||||| ||||| Sbjct 1545519 CGATACTATTGAA--AATGTTAAAGCAAAAATTCAA-GATAAAGAAGGAATTCCCCCTGA 1545463 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | |||||||| || |||||||||||||||| | ||| | ||||| Sbjct 1545462 CCAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTA 1545403 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||||| || ||||||| || Sbjct 1545402 TAATATTCAAAAAGAATCAACCTTACATTTGGT 1545370 >seq11 Length=923120 Score = 136 bits (150), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || || || ||| |||| || | || || || | || Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || ||||||||| ||| || |||||||| ||||| ||||| Sbjct 406332 GATACTATTGAA--AATGTTAAAGCAAAAATTCAA-GATAAAGAAGGTATTCCCCCTGAT 406388 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||||||||||||| | || | ||||| Sbjct 406389 CAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTAT 406448 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || ||||||| || |||| |||||||||| Sbjct 406449 AATATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGG 406498 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || || || ||| |||| || | || || || | || Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || ||||||||| ||| || |||||||| ||||| ||||| Sbjct 406104 GATACTATTGAA--AATGTTAAAGCAAAAATTCAA-GATAAAGAAGGTATTCCCCCTGAT 406160 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||||||||||||| | || | ||||| Sbjct 406161 CAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTAT 406220 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || ||||||| || |||| ||||||| || Sbjct 406221 AATATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGG 406270 Score = 113 bits (124), Expect = 4e-20 Identities = 115/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 ||||||||| ||| || |||||||| ||||| ||||| ||||| | | |||||||| Sbjct 405895 AAGCAAAAATTCAA-GATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCT 405953 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || |||||||||||||||| | || | ||||| ||||||||||||||||| || Sbjct 405954 GGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAATATTCAAAAAGAATCAACC 406013 Query 25197 CTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| || |||| ||||||| || Sbjct 406014 TTACATTTGGTTTTAAGATTAAGAGGTGG 406042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325475593570