Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 259 5e-64 >seq2 Length=1580255 Score = 259 bits (286), Expect = 5e-64 Identities = 604/889 (68%), Gaps = 29/889 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| | ||||| || || ||||| ||||||||||||||||||| ||||||| Sbjct 1448321 CATAACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTG 1448262 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||||| ||| || | | | | |||||| || | | | || ||||| | | Sbjct 1448261 TAAAGATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAA-ACTTTAGAACACC 1448203 Query 92908 CAACTCGTACAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC-AA 92965 | | | | | | |||||||||||| |||||||| || || |||||||| || || || Sbjct 1448202 CTAAACATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACAT-AAGTCTTGAA 1448144 Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTT-TCTCGATTACAA 93023 |||||||| | | | ||| |||| || || || |||| | |||| | | ||| Sbjct 1448143 TTCATTCCAATTAAATC-ACATGGTAAAGATTCACA-AATAAATGATCTCTCTACTTCAA 1448086 Query 93024 CGGCTTCTTTCAAGATTTCTATTACT-CTACTATTTGGTGGTTTTTGTACGACATAATTG 93082 | |||||||| | || | | || || || | |||| ||| | | | | || | Sbjct 1448085 CTGCTTCTTTAACTATATTTTGAACAACTTCT-TCTGGTAATTTATTTTCTAATAAACTA 1448027 Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCT 93141 || |||||||| ||| || ||||||| |||||| |||| || || | || ||||| || Sbjct 1448026 TAAATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTC-TGCTAATTAATTCATTACT 1447968 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||||||||||| |||| | |||| || | |||||| |||| | |||||| || Sbjct 1447967 AAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCC 1447908 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA---TTTGC 93258 | ||| ||||||||||| || |||| |||||||| | ||| |||||| |||| Sbjct 1447907 ACTAAATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAATTTGT 1447848 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 |||| |||||||| |||||| ||||| || || || |||| | Sbjct 1447847 ATCATTA------ATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATT 1447794 Query 93319 TTCGATAGCGTTAAATAGGT--AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 ||| ||||| | |||| | || || || | | |||| || || |||||||| Sbjct 1447793 TTCAATAGCATGGAATAAATTTAACCTTTCTTTTTC--ATCTTTAATATAATTATCGATT 1447736 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 || | | ||| |||||||||| | ||| || | || ||||| || || || | Sbjct 1447735 AATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTT 1447676 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTAT 93495 | ||||| | || | |||||| ||||| | ||| | | |||||| ||||| Sbjct 1447675 TTTGCTTCAATTATTTCTACTTCTCTTAAAAATTTA-CTAGCCAAATTTTCTAATACTAT 1447617 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 ||||| |||||||||||| || || | ||| |||||||||||||| |||| | || Sbjct 1447616 TCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATT 1447557 Query 93556 AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 | || || |||| | ||| |||| | ||| | |||||| | |||||||| || Sbjct 1447556 TAATTTTTCAAAATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGA 1447497 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 ||||| ||||||||||| | || ||| | || ||||| ||| ||| Sbjct 1447496 AGCTTCAGCTTTTTTGTAAAAATTCCAAACTTCAGGATATATAATAGGA 1447448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857472756720