Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq11 170 2e-37 seq3 168 6e-37 >seq11 Length=923120 Score = 170 bits (188), Expect = 2e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| ||||| || ||||| | |||||||| || ||| | || Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || || |||||||| || |||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406391 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| ||||| ||| | | || | || ||||| || Sbjct 406392 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406451 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 |||||||||||||| ||| ||||||| ||||| |||| | ||||||| Sbjct 406452 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGGTT 406500 Score = 163 bits (180), Expect = 2e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| ||||| || ||||| | |||||||| || ||| | || Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || || |||||||| || |||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406163 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| ||||| ||| | | || | || ||||| || Sbjct 406164 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406223 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 |||||||||||||| ||| ||||||| ||||| |||| Sbjct 406224 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATT 406261 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 || ||||| | |||||||| || ||| | ||||||| | || || | ||| |||| Sbjct 405843 GGAAAAACTATAACTCTTGATGTCGAACCATCCGATACTATTGAAAATGTTAAAGCAAAA 405902 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 |||||||| || || |||||||| || ||||||||| | | || ||||| || ||||| Sbjct 405903 ATTCAAGATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAACAA 405962 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 ||||| ||| | | || | || ||||| || |||||||||||||| ||| ||||||| Sbjct 405963 TTAGAAGATGGCAGAACATTATCTGATTATAATATTCAAAAAGAATCAACCTTACATTTG 406022 Query 22426 GTTTTGCGATT 22436 ||||| |||| Sbjct 406023 GTTTTAAGATT 406033 >seq3 Length=1724855 Score = 168 bits (186), Expect = 6e-37 Identities = 173/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 22202 TTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTC 22261 ||| ||||||| || |||||||| ||||| ||||| |||||||| ||||| |||||| Sbjct 1545595 TTTTTACATTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTC 1545536 Query 22262 TTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGG 22321 |||| || ||| | ||||||| | || || | ||| |||||||||||| || || | Sbjct 1545535 TTGATGTTGAACCATCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAG 1545476 Query 22322 GTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 | ||||| || || |||||| | || || ||||| || ||||| ||||| ||| | | | Sbjct 1545475 GAATTCCCCCTGACCAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAA 1545416 Query 22382 CCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 | | || ||||| || |||||||||||||| ||| ||||||| || Sbjct 1545415 CTTTATCTGATTATAATATTCAAAAAGAATCAACCTTACATTTGGT 1545370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725554822070