Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 141 2e-28 seq11 140 6e-28 >seq3 Length=1724855 Score = 141 bits (156), Expect = 2e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| |||| || || |||||||| || |||||||| || | || || |||||||| Sbjct 1545369 TACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTC 1545428 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||| || || || || || || |||||||||||||| || ||||| ||||| || ||||| Sbjct 1545429 TAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTG 1545488 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| ||||| || || || || || || | || ||| || || | ||||| ||||| Sbjct 1545489 AATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTT 1545548 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| || | || || || || || |||||| Sbjct 1545549 TCCGGTTAATGTTTTTACAAAGATTTGCATT 1545579 >seq11 Length=923120 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || ||||| |||| || || |||||||| || |||||||| || | ||| || |||||| Sbjct 406255 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCT 406196 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || || || | ||||||||| || || ||||| ||||| || ||| Sbjct 406195 TCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCT 406136 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| ||||| || || || || || || | || ||| || || | || |||||| Sbjct 406135 TGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTT 406076 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || | || || || || |||||||| Sbjct 406075 TTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || ||||| |||| || || |||||||| || |||||||| || | ||| || |||||| Sbjct 406483 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCT 406424 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || || || | ||||||||| || || ||||| ||||| || ||| Sbjct 406423 TCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCT 406364 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| ||||| || || || || || || | || ||| || || | || |||||| Sbjct 406363 TGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTT 406304 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || | || || || || |||||||| Sbjct 406303 TTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || ||||| |||| || || |||||||| || |||||||| || | ||| || |||||| Sbjct 406027 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCT 405968 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || || || | ||||||||| || || ||||| ||||| || ||| Sbjct 405967 TCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCT 405908 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| ||||| || || || || || || | || ||| || || | || || ||| Sbjct 405907 TGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATAGTT 405848 Query 68430 TTTCC 68434 ||||| Sbjct 405847 TTTCC 405843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616893306160