Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 118 3e-21 seq11 107 5e-18 >seq3 Length=1724855 Score = 118 bits (130), Expect = 3e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | | || | || ||||||||||||||||| || || Sbjct 1545387 TTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCAGCAAA 1545446 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||||| | || |||||||||||||| || ||||| ||||| || || Sbjct 1545447 AATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGAATTTTTGCTTTAACATT 1545506 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | ||| || || || ||||| || || ||||| | || || || Sbjct 1545507 TTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTTTTTAC 1545566 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 1545567 AAAGATTTGCATT 1545579 >seq11 Length=923120 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | | || | || ||||||||||||||||| || || Sbjct 406235 TTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAA 406176 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || || ||||||||||| || ||||| ||||| || || Sbjct 406175 AATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATT 406116 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | ||| || || || || || || || || || | || || || Sbjct 406115 TTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTAC 406056 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 406055 AAAAATCTGCAT 406044 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | | || | || ||||||||||||||||| || || Sbjct 406463 TTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAA 406404 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || || ||||||||||| || ||||| ||||| || || Sbjct 406403 AATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATT 406344 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | ||| || || || || || || || || || | || || || Sbjct 406343 TTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTAC 406284 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 406283 AAAAATCTGCAT 406272 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | | || | || ||||||||||||||||| || || Sbjct 406007 TTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAA 405948 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || || ||||||||||| || ||||| ||||| || || Sbjct 405947 AATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATT 405888 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 ||| |||| |||| | ||| || || || || || || || || Sbjct 405887 TTCAATAGTATCGGATGGTTCGACATCAAGAGTTATAGTTTTTCC 405843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647175354084