Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq11 91.5 1e-13 >seq3 Length=1724855 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||| || ||||| | | || | | ||||| | || || || Sbjct 1545382 GTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 1545441 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || | || ||||| || |||||||||||||| ||||| | |||||||||| Sbjct 1545442 GCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTG-AATTTTTGCTTT 1545500 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||| | || || || | ||| | || || ||||| || || Sbjct 1545501 AACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 1545560 Query 64426 TTTTACGAAAATTTGCATTTT 64446 |||||| || ||||||||||| Sbjct 1545561 TTTTACAAAGATTTGCATTTT 1545581 >seq11 Length=923120 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | || | ||| | || |||||||||||||| || ||||| | | || | Sbjct 406261 AATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTG 406202 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || || || || ||||| |||||| Sbjct 406201 CCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCT 406142 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||||||||| ||| || | ||||| | || || || | ||| Sbjct 406141 TTATCTTG-AATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGT 406083 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||| || || || || |||||||| ||||| ||||| Sbjct 406082 TATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | || | ||| | || |||||||||||||| || ||||| | | || | Sbjct 406489 AATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTG 406430 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || || || || ||||| |||||| Sbjct 406429 CCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCT 406370 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||||||||| ||| || | ||||| | || || || | ||| Sbjct 406369 TTATCTTG-AATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGT 406311 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||| || || || || |||||||| ||||| ||||| Sbjct 406310 TATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641814622320