Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11 100 3e-16 seq3 82.4 8e-11 >seq11 Length=923120 Score = 100 bits (110), Expect = 3e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||| || |||| || | ||||| ||||||| | |||| || |||||||| || || || Sbjct 406502 GCAACCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATC 406443 Query 138444 -GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCG 138502 | | || | || | || || | |||||| || | | | |||| | ||||| || | Sbjct 406442 AGATAATGTTCTGCCA-TCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAG 406384 Query 138503 GAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGAC 138561 | || ||||||||||| || ||| |||||| ||||| | ||| | || |||| | Sbjct 406383 GGGGAATACCTTCTTTATCT-TGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGT 406325 Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || | || | ||||| ||||| | |||||||||||||||||||| Sbjct 406324 TCGACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTC 138461 ||||| ||||||| | |||| || |||||||| || || || | | || | || | || Sbjct 406255 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCA-TC 406197 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || | |||||| || | | | |||| | ||||| || || || ||||||||||| || Sbjct 406196 TTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATC 406137 Query 138522 GGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| |||||| ||||| | ||| | || |||| | || || || | || | | Sbjct 406136 T-TGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGG 406078 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||||| | |||||||||||||||||||| Sbjct 406077 TTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 >seq3 Length=1724855 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTC 138464 || ||||||| | |||| || |||||||| || || || | ||| | || | || || Sbjct 1545370 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCA-TCTTC 1545428 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | |||||| || | | | ||||| | |||||||| || || || |||||||| || | Sbjct 1545429 TAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCT-T 1545487 Query 138525 GATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || |||||| ||||| | ||| | || |||| | || || || | || | |||| Sbjct 1545488 GAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTT 1545547 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || | ||||||||||| || ||||| Sbjct 1545548 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1545578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259434832160