Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq11 134 1e-26 seq3 113 3e-20 >seq11 Length=923120 Score = 134 bits (148), Expect = 1e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||||||||| ||||| | ||| || |||||||| || || ||||| | Sbjct 406270 CCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCA--G 406213 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | |||||||||||||| ||||| | || || | ||||| || | Sbjct 406212 ATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGG 406153 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || |||||| ||| ||| |||| ||||||||| ||| | Sbjct 406152 GAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGA 406093 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || |||||||| || || | |||||||||||||| |||||| Sbjct 406092 CATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 406043 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||||||||| ||||| | ||| || |||||||| || || ||||| | Sbjct 406498 CCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCA--G 406441 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | |||||||||||||| ||||| | || || | ||||| || | Sbjct 406440 ATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGG 406381 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || |||||| ||| ||| |||| ||||||||| ||| | Sbjct 406380 GAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGA 406321 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || |||||||| || || | |||||||||||||| |||||| Sbjct 406320 CATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 406271 Score = 105 bits (116), Expect = 5e-18 Identities = 147/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||||||||| ||||| | ||| || |||||||| || || ||||| | Sbjct 406042 CCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCA--G 405985 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | |||||||||||||| ||||| | || || | ||||| || | Sbjct 405984 ATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGG 405925 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || |||||| ||| ||| |||| ||||||||| ||| | Sbjct 405924 GAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGA 405865 Query 15128 CGTCTAAGGTAATGGTTTTACCTG 15151 | || | || || ||||| |||| Sbjct 405864 CATCAAGAGTTATAGTTTTTCCTG 405841 >seq3 Length=1724855 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| | ||| || |||||||| || || ||||| | | |||| | |||||| Sbjct 1545370 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCT 1545429 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| ||||| | || | | |||||||| ||||||||||| || || | Sbjct 1545430 AATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGA 1545489 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||| ||| |||| ||||||||| ||| || || | || || ||||| Sbjct 1545490 ATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTT 1545549 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || | ||||||||||| |||||||| || Sbjct 1545550 CCGGTTAATGTTTTTACAAAGATTTGCATTTT 1545581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389917968230