Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq11 136 4e-27 seq3 134 1e-26 >seq11 Length=923120 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || || | ||| | |||||||| ||||| ||||||||||| | ||| | | Sbjct 406258 CTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCA 406199 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || | || |||| ||| || || || ||||| ||||||||| Sbjct 406198 TCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTA 406139 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| ||| | ||| | || ||||| | ||||| || ||||| | Sbjct 406138 TCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATG 406079 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| |||||||||||||| ||||| Sbjct 406078 GTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || || | ||| | |||||||| ||||| ||||||||||| | ||| | | Sbjct 406486 CTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCA 406427 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || | || |||| ||| || || || ||||| ||||||||| Sbjct 406426 TCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTA 406367 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| ||| | ||| | || ||||| | ||||| || ||||| | Sbjct 406366 TCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATG 406307 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| |||||||||||||| ||||| Sbjct 406306 GTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || || | ||| | |||||||| ||||| ||||||||||| | ||| | | Sbjct 406030 CTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCA 405971 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || | || |||| ||| || || || ||||| ||||||||| Sbjct 405970 TCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTA 405911 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| ||| | ||| | || ||||| | ||||| || ||||| | Sbjct 405910 TCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATA 405851 Query 45306 GTTTTGCC 45313 ||||| || Sbjct 405850 GTTTTTCC 405843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| || || || ||| | || ||||| || ||||| ||| | ||| Sbjct 448647 CAAATTGAAACTGGTGTACCATATATGTTATATAAAGATGCATGCAATTCTAAATCTAAT 448706 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || || |||||||| ||||||||||| | || | ||||| || ||||||| | Sbjct 448707 CAAAAAAATTTAGGAACAATTAAATGTAGTAACTTATGTTGTGAAATAATTGAATACACC 448766 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATT 123758 | ||| |||| || || |||||||||||||| ||| Sbjct 448767 TCACCTGATGAAGTAGCTGTTTGTAATTTGGCTTCAATT 448805 >seq3 Length=1724855 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 |||||||| ||||| ||||||||||| | ||| | ||| || ||||||||||| Sbjct 1545382 GTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 1545441 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || | || | || ||| ||||| || ||||| ||||||||||||||||||||| ||| Sbjct 1545442 GCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGAATTTTTGCTTTA 1545501 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | || ||||| | || || || ||||| | ||||| ||||||| ||| Sbjct 1545502 ACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1545561 Query 45324 TTTACAAAAATTTGCAT 45340 |||||||| |||||||| Sbjct 1545562 TTTACAAAGATTTGCAT 1545578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000499280880