Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 seq11 98.7 7e-16 >seq3 Length=1724855 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39510 TACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTC 39569 ||||||||| || || ||||||||| ||||||||||| | ||| | |||| || Sbjct 1545369 TACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTC 1545428 Query 39570 CAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCA 39629 |||||||| || ||||||||| | || || || | ||| | |||||||| || Sbjct 1545429 TAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTG 1545488 Query 39630 TATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTT 39689 |||||| ||||| | | | || || | ||| || || | ||| |||||||| Sbjct 1545489 AATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTT 1545548 Query 39690 ACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||||||| ||||| ||||| Sbjct 1545549 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1545578 >seq11 Length=923120 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||| || || ||||||||| ||||||||||| | || | |||| || Sbjct 406252 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCT 406193 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || |||||||||| | || ||||| | ||| | |||||||| || Sbjct 406192 AATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGA 406133 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 |||||| ||||| | | | || || | ||| || || | ||| || ||||| Sbjct 406132 ATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTTTT 406073 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||||||| || |||||||| Sbjct 406072 CCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||| || || ||||||||| ||||||||||| | || | |||| || Sbjct 406480 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCT 406421 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || |||||||||| | || ||||| | ||| | |||||||| || Sbjct 406420 AATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGA 406361 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 |||||| ||||| | | | || || | ||| || || | ||| || ||||| Sbjct 406360 ATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTTTT 406301 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||||||| || |||||||| Sbjct 406300 CCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347367576354974