Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11 165 1e-35 >seq11 Length=923120 Score = 165 bits (182), Expect = 1e-35 Identities = 716/1126 (64%), Gaps = 10/1126 (1%) Strand=Plus/Plus Query 111870 CATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATT 111929 || ||| | |||| | || ||| ||||||||| || |||||| |||| ||||| | Sbjct 448215 CAAGATATAAGAGGTCAGAATTCTTATATTAGAGGAACTAATGGTATATCAAATGGTTTA 448274 Query 111930 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC-- 111987 |||||||| | | || ||||| | || || | |||||| | |||| ||| | Sbjct 448275 GTTCCAATGTTAAGGGTTTTTAATGATACGGCAAGGTATGTAGATCAAGGTGGAGGGAAA 448334 Query 111988 -GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046 | || |||||| | ||||| ||| | ||||||||||| | ||||| | || || | Sbjct 448335 AGAAAAGGATCTTTTGCAGTATATATAGAGCCATGGCATTCAGATATTTTTGAATTTTTA 448394 Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106 || || | || || ||| | || || | || ||| | || | ||| | Sbjct 448395 GATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTCGAGATTTATTTTATGCTATT 448454 Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166 ||| | || ||| | || ||||| ||||| | || | | || ||| || | | ||| Sbjct 448455 TGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAAAAACTGGACTTTAATGTGT 448514 Query 112167 CCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || | | || ||| | || | ||| || || |||||| | || ||| Sbjct 448515 CCTAATGAATGTCCAGGTTTAAGTGAATCTTGGGGAGACGAATTTGAAAAGTTATATACA 448574 Query 112227 AAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCT 112286 || || || ||||||| | | | || || | || ||| | ||| ||| Sbjct 448575 AAATATGAAGAAGAAAATTTAGGAAAAAAAACAGTCCTTGCACAAGATTTATGGTTTGCT 448634 Query 112287 ATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAAC 112346 || | | ||||| || |||||| |||||||||| | || ||||| || || || Sbjct 448635 ATATTACAAAGTCAAATTGAAACTGGTGTACCATATATGTTATATAAAGATGCATGCAAT 448694 Query 112347 CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATC 112406 || ||||||||| ||||| || || || || ||| | ||| ||||| Sbjct 448695 TCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAACTTATGTTGTGAAATA 448754 Query 112407 TTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCC 112466 | |||| || ||||| ||||| ||||| | || ||||| || | Sbjct 448755 ATTGAATACACCTCACCTGATGAAGTAGCTGTTTGTAATTTGGCTTCAATTGCATTATGT 448814 Query 112467 AAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAA 112526 || | ||| ||| ||| | ||| |||| ||| | ||||| | | || |||| ||| Sbjct 448815 AAATTTGTTGATAGAGAAAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAA 448874 Query 112527 ACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCT 112586 | | | || | ||| || | | | ||||||| ||||||| |||||| || | ||| Sbjct 448875 ATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGCT 448934 Query 112587 CGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTA 112646 ||||| |||| || || || || ||||| | || || ||||| | || ||| | Sbjct 448935 GAAAAATCAAATAAAAGGCATCGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACA 448994 Query 112647 TTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATA 112706 || || |||| | | ||| ||| || |||||||| || ||| | ||| | ||| Sbjct 448995 TTTATGCTTTTAAGATATCCATATGAATCTGACGAAGCTAAAGAATTAAATAAAAGAATA 449054 Query 112707 TTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGT 112766 ||||||||||||||| | || ||| | || | | || || ||| | || ||||| Sbjct 449055 TTTGAGACAATGTATTATGCGGCTTTAGAAATGTCTGTTGAATTAGCACAAGTACATGGT 449114 Query 112767 CCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 112826 ||||||||| | | | ||||| |||||| ||||| | | ||||||||||||| | Sbjct 449115 CCATATGAATCATATAAGGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT-G 449173 Query 112827 GAAGGTGAGACCA-AGCTTCACTA---CGACTGGGACGCTCTCAAGGAACGCATCAAGGA 112882 ||| | | | | | | | || || ||||| | | || || | ||| | Sbjct 449174 GAATGCAAAAGTAGATAATAAATATTGGGATTGGGA-TTTATTAAAAAAAAAAATAAGCA 449232 Query 112883 GA-AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA 112941 | | || | | || ||| | | ||||| ||||||||||| || || |||||| Sbjct 449233 TACATGGATTAAGAAATTCACTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAA 449292 Query 112942 TCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 | ||||| |||||||||| |||||||| || || | ||||| || Sbjct 449293 TTTTGGGAAATAATGAATCTTTTGAACCATATACAAGTAACATTTA 449338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738691064160