Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11 551 6e-152 seq2 352 3e-92 >seq11 Length=923120 Score = 551 bits (610), Expect = 6e-152 Identities = 1154/1707 (68%), Gaps = 54/1707 (3%) Strand=Plus/Minus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||||||||| || |||| | ||||| ||||| || | |||| | |||| || || Sbjct 449576 CTGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTC 449517 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGAT---TAGTATTTTGAATAGA 47239 ||| || |||||||| | || ||| | ||| | || | | || ||| ||| | | Sbjct 449516 CCAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATATATTGGACACT 449457 Query 47240 TCCTCCgttttctat-aatt-ttgttttttaa-ttcatttgaccaaagttttcgttcagt 47296 ||| || | || |||| |||||| || ||||| || || | | ||| Sbjct 449456 TCCATTGTGAGCAATTAATTGTTGTTTCATATCTTCATCCCACAAACCTCTA---TCAAA 449400 Query 47297 taatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 | |||||| | ||||||||| |||| ||||| ||| || ||| ||| || Sbjct 449399 AAGATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATAC---ACGTCT 449343 Query 47357 ATAT---ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGT 47413 ||| || ||||||||||||||||| | ||||||||||||||| |||||||| | ||| Sbjct 449342 ATAGTAAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGT 449283 Query 47414 TGATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCT 47472 ||| ||||| ||||| | ||| | || ||| | ||||||| ||||| | | ||| | Sbjct 449282 TGAAGCTGTTGGCATAGGTGCTAA-AAGAAGTGAATTTCTTAATCCATGTATGCTTATTT 449224 Query 47473 NNNNNNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACAA--CATTCCAAAAATCAT 47529 | |||||||||| | | | || | ||||||| | |||| Sbjct 449223 TTTTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAA 449164 Query 47530 ATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTT 47589 |||| | ||||||| ||| ||| ||| ||||||| || ||| ||||| | || || Sbjct 449163 ATTGTAATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTT 449104 Query 47590 TAGCGAGTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTAT 47647 || | |||| || || | ||| || || |||||| ||||| ||||||||| || | Sbjct 449103 GTGCTAATTCAACAGACAT--TTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTT 449046 Query 47648 GTTTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTG 47706 |||| |||| || ||||| |||||| | ||||| |||||||||| Sbjct 449045 ATTTA-ATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTG 448987 Query 47707 CCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTG 47766 | |||||||| || || || ||||| |||| ||| ||||||| || ||||||||| Sbjct 448986 CTAATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTT 448927 Query 47767 GTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAA 47826 | ||| || | ||| | || |||||||||| || | || Sbjct 448926 TAATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAA 448867 Query 47827 TTTCTCTTAATTTATTAAAATCAAA--CTTGTTATT---TAT-AACAAACCTATTAAGTG 47880 | || |||||| ||||||| ||| ||| || || ||| |||||| || | || Sbjct 448866 TATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATG 448807 Query 47881 CTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAG 47940 | || || || | |||||| |||||||| |||| || || |||| ||||||||| Sbjct 448806 CAATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCAC 448747 Query 47941 CACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA---TTNNNNTTGTTAC 47997 ||||| |||| |||||| || || || ||||||| |||||| || ||| | Sbjct 448746 AACATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTG---C 448690 Query 47998 ATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATT 48057 |||| || || || | |||| | ||| |||||||| || ||| || | |||| Sbjct 448689 ATGCATCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAA 448630 Query 48058 TCCAAACA----GTCCTAGC-CTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTT 48112 ||| | | || | || || | | | | || ||| || | ||| ||||| Sbjct 448629 ACCATAAATCTTGTGCAAGGACTGTTTT-----TTTTCCTAAATTTTCTTCTTCATATTT 448575 Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCT-AACCCAGGACATTCATTAG 48171 ||||||||||| |||||||| || || | | ||| || || || ||||||||||||| Sbjct 448574 TGTATATAACTTTTCAAATTCGTCTCCCCA-AGATTCACTTAAACCTGGACATTCATTAG 448516 Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231 ||||||| || | ||| | | || | ||||||||| ||||||||| ||| |||| || Sbjct 448515 GACACATTAAAGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCC 448456 Query 48232 AAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTT 48291 ||| ||| ||||||||| | || ||||| |||||| || ||| ||| || | | | Sbjct 448455 AAATAGCATAAAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAAT 448396 Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 | | ||| || | ||||| | ||||||||| |||| ||||| ||| | ||| || Sbjct 448395 CTAAAAATTCAAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTC 448336 Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA 48411 ||| || |||||||||| ||| || || |||| ||| |||| ||||||||||| | Sbjct 448335 TTTTCCCTCCACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAA 448276 Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATA--ACTTCCACTAGCTCTTATATT 48469 | | |||||||||||||||||| ||||| |||||| | ||| | ||||||||| Sbjct 448275 CTAAACCATTTGATATACCATTAGTTCCTCTAATATAAGAATTC--TGACCTCTTATATC 448218 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 | | || ||||| || ||||| ||||| || | |||||| |||| | || Sbjct 448217 TTGTACAGCAACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGT 448158 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 ||| | || ||||| ||| ||| | ||||| ||||||||||||| |||||||| Sbjct 448157 TTCAAATATACCTTCAATAGAATCTGATTTCATAGATAATAGAAAACAAGATGACATTTG 448098 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 ||| | |||||||||||||||||||| || | ||||| | || |||| | || Sbjct 448097 CGGTCGTGGGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGA 448038 Query 48650 TAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATAC 48709 | || | ||||||||| | | | || | ||| | ||| || || || || || Sbjct 448037 CATTAAATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACAC 447978 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 | |||||| | || |||||| | ||||| |||||| ||||| ||| || | |||||| Sbjct 447977 TCTCATTAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGA 447918 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATA 48796 | ||| || |||||||| |||||||| Sbjct 447917 TCGTTCTAAAGTTTTAAATCCAAAATA 447891 >seq2 Length=1580255 Score = 352 bits (390), Expect = 3e-92 Identities = 657/953 (69%), Gaps = 29/953 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAAT--TCTCTTCATTAGAATTCATTACTCCCATT 18669 |||||||||| || ||||||||| | ||| ||| || | ||| || || Sbjct 1448366 TTAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTG--AGCCATAACACCTGAC 1448309 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||| || ||||||||||||||||||||||| |||||||| | ||| ||||| | Sbjct 1448308 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1448249 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||| |||||||||||| || | | | ||| | ||||| | |||| Sbjct 1448248 TCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGT 1448189 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||||||| ||| | |||||||||| ||||| Sbjct 1448188 AATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCATTCCAATTAAA 1448129 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | | |||| | || || |||| | |||| | ||||| ||| | ||| Sbjct 1448128 TCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTATA 1448069 Query 18910 GAT---ACAACTCTATCT--TCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATG 18964 | |||||| ||| | ||| | | || | | || | || || || Sbjct 1448068 TTTTGAACAACTTCTTCTGGTAATTT--ATTTTCTAATAAAC---TATAAATTAAGCAAT 1448014 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 ||||||| |||||| || || ||||| || || ||||||||| ||||||||||||| Sbjct 1448013 TAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCAT 1447954 Query 19025 GCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 | | | | | || ||||| ||||| || || | | ||| |||| ||| ||||| Sbjct 1447953 GTA--ATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATAT 1447896 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 ||||||||| |||| ||| || | |||||| || || | || ||| || ||| Sbjct 1447895 ACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAA---GAATTTGTATCATTAAT 1447839 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||||| ||||| || || ||||||| ||| || | || |||| || || Sbjct 1447838 CCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGGAA 1447779 Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 || || | | || | | |||||||| ||| ||| || |||||||| || |||| Sbjct 1447778 TAAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATATGTTTC 1447719 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 ||||| |||||||| | ||| || ||||| ||||| | ||||||| |||| | Sbjct 1447718 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTATTTC 1447659 Query 19323 TACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 |||||| || ||||| || | | |||||||||| |||||||||||||| ||||||| Sbjct 1447658 TACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCATCACTTGCTGCAA 1447600 Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCAT 19441 |||||||||| |||||||| |||||||||||||||| | ||||| | | |||| | Sbjct 1447599 AAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAATCTT 1447540 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | | ||| | |||||||| | ||||||| |||||||||| ||||| || |||||||| | Sbjct 1447539 TCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGT 1447480 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGA---AATATAACAAATCTATTT 19551 | | ||||| | ||| ||||| |||||| ||| | |||||||||| Sbjct 1447479 AAAAATTCCAAACTTCAGGATATATAATAGGATGCAATGT---AAATCTATTT 1447430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105441399920