Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 295 8e-75 >seq2 Length=1580255 Score = 295 bits (326), Expect = 8e-75 Identities = 568/832 (68%), Gaps = 17/832 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || |||||||| ||| |||||| | |||| || |||||||| ||||||| Sbjct 1448321 CATAACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTG 1448262 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 || ||||| ||||| ||| ||||||||| | || | | | || ||| Sbjct 1448261 TAAAGATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCC 1448202 Query 36992 TAATTCCTTC-AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 ||| | ||| || | ||||| ||||||||||| || |||| | |||| ||| | | Sbjct 1448201 TAAA-CATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAAT 1448143 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || ||||||| | ||| | | || || |||| | | |||| | || | Sbjct 1448142 TCATTCCAATTAAATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTG 1448083 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 | |||||||||||||| || ||||||||| | | || || ||| | || | | Sbjct 1448082 CTTCTTTAACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAACTATAAA 1448023 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 ||| || ||||||| ||||| |||||||||||| || || ||||||||| ||| | Sbjct 1448022 TTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATG 1447963 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 |||| || | | | | | |||||||| |||||| ||||| |||| |||| || Sbjct 1447962 TTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAA 1447903 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 | || |||||||| || |||| || |||| | | | | |||| || | || Sbjct 1447902 ATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAG---AATTTGTAT 1447846 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 || ||||||||| | ||| ||| || ||| | | || ||||||| | Sbjct 1447845 CATTAATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAG 1447786 Query 37411 CTTTTAAGAGA---AAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAAC 37467 | | || | | || ||| || |||| ||| | |||||| |||| |||| ||||| Sbjct 1447785 CATGGAATAAATTTAACCTTTCTTTTTCA---TCTTTAATATAATTATCGATTAATAAAC 1447729 Query 37468 TATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTT 37527 |||| ||||||| || |||||||||| |||||| |||||| |||||| | |||| Sbjct 1447728 TATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTT 1447669 Query 37528 CAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCAC 37587 || || || || || | ||||| | |||| || ||||| ||||| ||||||| Sbjct 1447668 CAATTATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCAC 1447609 Query 37588 TAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTGATAATT 37644 | |||||||| || || | ||||| ||||||||||||| |||||| ||||| |||| Sbjct 1447608 TTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTT---AATT 1447552 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||| |||| || | ||| |||||||||||| ||| ||| | |||||||| Sbjct 1447551 TTTCAAAATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAA 1447500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592313260907120