Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq3 98.7 8e-16 >seq11 Length=923120 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || |||||||||| || |||||||||||||| |||||||||| ||| | || Sbjct 406255 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCT 406196 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || || || ||||| || | || |||||||| | ||||| || || || || Sbjct 406195 TCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCT 406136 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||| ||| ||| ||| | | || || || | || || || | || || ||| Sbjct 406135 TGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTT 406076 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||||||||||||||||||| Sbjct 406075 TTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || |||||||||| || |||||||||||||| |||||||||| ||| | || Sbjct 406483 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCT 406424 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || || || ||||| || | || |||||||| | ||||| || || || || Sbjct 406423 TCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCT 406364 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||| ||| ||| ||| | | || || || | || || || | || || ||| Sbjct 406363 TGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTT 406304 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||||||||||||||||||| Sbjct 406303 TTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 >seq3 Length=1724855 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||||| || |||||||||||||| |||||||||| | ||| | || || Sbjct 1545370 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCT 1545429 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || ||||| || |||| ||||| || | ||||| || || || || | Sbjct 1545430 AATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGA 1545489 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| ||| ||| | | || || || | || || || | || || |||||| Sbjct 1545490 ATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTT 1545549 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||||||||| || ||||| Sbjct 1545550 CCGGTTAATGTTTTTACAAAGATTTGCAT 1545578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935380800394