Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq11 125 6e-24 seq3 118 9e-22 >seq11 Length=923120 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||||||||| || |||||||| || || ||||| || Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || || ||||| || | ||| ||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAA-GATAAAGAAGGTATTCCCCCTGATCA 406390 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || |||||||| |||||| | ||| | | |||||||| Sbjct 406391 ACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAA 406450 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||||||||| || | || |||| ||||||||| ||||||| Sbjct 406451 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGG 406498 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||||||||| || |||||||| || || ||||| || Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || || ||||| || | ||| ||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAA-GATAAAGAAGGTATTCCCCCTGATCA 406162 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || |||||||| |||||| | ||| | | |||||||| Sbjct 406163 ACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAA 406222 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| || | || |||| ||||||||| |||| || || Sbjct 406223 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGGTAT 406273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||||| || || ||||| || | ||| |||||||| ||| | || ||||| Sbjct 405895 AAGCAAAAATTCAA-GATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCT 405953 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || |||||||| |||||| | ||| | | |||||||| |||||||||||||| || Sbjct 405954 GGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAATATTCAAAAAGAATCAACC 406013 Query 28752 CTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || |||| ||||||||| |||| || || Sbjct 406014 TTACATTTGGTTTTAAGATTAAGAGGTGGTAT 406045 >seq3 Length=1724855 Score = 118 bits (130), Expect = 9e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| ||||||||||||||||| || ||||| || || || ||||| Sbjct 1545581 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1545522 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || | || ||||||| || || ||||| ||| | ||| || Sbjct 1545521 TCCGATACTATTGAAAATGTTAAAGCAAAAATTCAA-GATAAAGAAGGAATTCCCCCTGA 1545463 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| ||||| || ||||| || |||||||| |||||| | |||| | | ||||| Sbjct 1545462 CCAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTA 1545403 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| |||||||||||||| || | || ||||| || Sbjct 1545402 TAATATTCAAAAAGAATCAACCTTACATTTGGTAATA 1545366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425402321751162