Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq11 381 3e-101 >seq11 Length=923120 Score = 381 bits (422), Expect = 3e-101 Identities = 994/1495 (66%), Gaps = 58/1495 (4%) Strand=Plus/Minus Query 25059 ATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATG 25118 ||||||||||| ||||||||||||| || ||||| ||||| || ||||||||||| || Sbjct 449322 ATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGCTGTTGGCATAGGTG 449263 Query 25119 CTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAAT 25178 ||| | || |||||||| || |||| | | || | || ||||||| |||||||| Sbjct 449262 CTAAAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTTTTAATAAATCCCAAT 449203 Query 25179 CTAAAT---TATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCA- 25234 | ||| ||||||||| | | | || || ||| ||||||||||| | ||| Sbjct 449202 CCCAATATTTATTATCTACTT---TTGCATTC-CACATA--TCAAATTGTAATATTCCTT 449149 Query 25235 --CTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTT 25292 ||||||| | | || | | | |||| ||| | | | ||| | || Sbjct 449148 GGCTTGCTGGACTACCCTTAT---ATGATTCATATGGACCATGTACTTGTGCTAATTCAA 449092 Query 25293 TTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAG 25352 || ||||| || ||||||||||| | ||||| || ||| ||||| |||| Sbjct 449091 CAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTAATTCTTTAG 449032 Query 25353 CTTTTTCTCCATCGAAAGCAATTTCCATTAAGGCG--AACGTATCTGCTAATCCCTGAAC 25410 ||| || || | | | | | | || || || |||||||||||||| || || Sbjct 449031 CTTCGTCAGATTCATATGGATAT--CTTAAAAGCATAAATGTATCTGCTAATCCTTGTAC 448974 Query 25411 TCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAA 25470 ||||| ||||| || ||||| | ||||| | | |||| |||| |||| || | Sbjct 448973 TCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATA 448914 Query 25471 ATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTC 25530 |||| | || || | ||||||| ||| | | || ||| ||| | || | Sbjct 448913 ATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAA--TTTTAGTAATATCATAT--- 448859 Query 25531 AATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGAT 25590 ||| | ||| ||| || ||| | ||||| | ||||||||| |||| || || Sbjct 448858 AATTTTTTAAAATTAAAT----TCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 448803 Query 25591 TGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCAGAA-TATTCATTGATCTCGATAC 25649 ||| || ||||||||||||||| ||| | | || || |||||| | || || || Sbjct 448802 TGAAGCCAAATTACAAACAGCTACTTCAT-CAGGTGAGGTGTATTCAATTATTTCACAAC 448744 Query 25650 ATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAATAT 25709 ||||||| ||| |||| ||| ||| |||| ||||||||| | |||| || Sbjct 448743 ATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCAT 448684 Query 25710 CTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAA 25769 |||||||| | |||||| || |||||||||||| | ||| || ||| | Sbjct 448683 CTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATA 448624 Query 25770 GTTCTCTCGCTTTTACT---TTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTAAA 25826 ||| || ||| || ||| | || || | || | | ||| ||| | Sbjct 448623 AATCTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCA-----TATTTTGTATA 448569 Query 25827 GTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAA 25886 || || | | || | || | ||| || | || | || | | | Sbjct 448568 T------AACTTTTCAAATTCGTCTCCCCAAGA-----TTCACTTAAACCTGGACATTCA 448520 Query 25887 TATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTG 25946 | | ||||| | |||| ||| | ||||| | ||| | | |||||||||||| | Sbjct 448519 T--TAGGACACATTAAAGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAG 448462 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 | | ||| || |||||||||||||||| ||||| | ||||||||| || ||||| ||| Sbjct 448461 GTACCCAAATAGCATAAAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTC 448402 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 ||| |||||| || |||||||||||||| |||||||| |||| ||| | |||||| | Sbjct 448401 TTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATC 448342 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 |||||||||| ||||||||||||||||| || ||||| || ||||| ||||| | |||| Sbjct 448341 CTTTTCTTTTCCCTCCACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACA 448282 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT-TGGATCCTGTCGATCTA 26185 |||||||||| ||| |||| | || || || | ||| | | || ||| | ||| Sbjct 448281 TTGGAACTAAACCATTTGATATACCATTAGTTCCTCTAATATAAGAATTCTGAC-CTCTT 448223 Query 26186 ATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAA 26245 ||||| || || || || || || || || ||| ||| ||||| | | Sbjct 448222 ATATCTTGTACAGCAACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTT 448163 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 | ||| || || || |||| || ||| |||||| ||||| ||||||||| || Sbjct 448162 AATGTTTCAAATATACCTTCAATAGAATCTGATTTCATAGATAATAGAAAACAAGATGAC 448103 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCT 26365 | ||||| | | |||||||||||||||||||| ||||||||||| || ||||| | Sbjct 448102 ATTTGCGGTCGTGGGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTT 448043 Query 26366 TCACTCA-AAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAAT 26424 | | || | || ||| ||||| | | ||| || | || | || || | |||| Sbjct 448042 TGAGACATTAAATG-ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAAT 447984 Query 26425 AGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAAT 26484 | ||| | | | || |||||| |||||||| | ||||| | || |||| Sbjct 447983 TGACACTCTCATTAATAAATGTTGAGGACGTTCAATAATTTTATTAT--TAATTCGTAAT 447926 Query 26485 CAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATCTCTT 26539 ||||| ||| |||||||||||| |||||||||||||||| ||| ||||| ||| Sbjct 447925 -AAATATGATCGTTCTAAAGTTTTAAATCCAAAATAATCATAATTAAAATCCCTT 447872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038525883850