Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11 118 1e-21 seq2 86.0 7e-12 seq5 82.4 9e-11 >seq11 Length=923120 Score = 118 bits (130), Expect = 1e-21 Identities = 443/689 (64%), Gaps = 7/689 (1%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| |||||||||| | || || ||||| || || || ||| ||||| Sbjct 448653 GAAACTGGTGTACCATATATGTTATATAAAGATGCATGCAATTCTAAATCTAATCAAAAA 448712 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||||| |||||||| || | || | || ||||| | || ||||| Sbjct 448713 AATTTAGGAACAATTAAATGTAGTAACTTATGTTGTGAAATAATTGAATACACCTCACCT 448772 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||| |||||||| |||||||| ||||| || | || | ||| || ||| Sbjct 448773 GATGAAGTAGCTGTTTGTAATTTGGCTTCAATTGCATTATGTAAATTTGTTGATAGAGAA 448832 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | ||| ||| | ||||| | |||| || || || ||| |||| | |||| || Sbjct 448833 AAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTTA 448892 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGA 76204 | | | ||||| ||||||| ||| || || | || ||| || |||| | Sbjct 448893 GATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGCTGAAAAATCAAATAAAAGG 448952 Query 76205 CACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTAC 76264 || |||||||||| | || || ||||| | || ||| |||||| | | | || Sbjct 448953 CATCGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGATAT 449012 Query 76265 GCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCAC 76324 ||| ||| || || ||||| || || | ||| | || ||||| || |||||| | Sbjct 449013 CCATATGAATCTGACGAAGCTAAAGAATTAAATAAAAGAATATTTGAGACAATGTATTAT 449072 Query 76325 GCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAG 76384 || | | || | | |||||| || ||| || ||| | ||||| ||| | || Sbjct 449073 GCGGCTTTAGAAATGTCTGTTGAATTAGCACAAGTACATGGTCCATATGAATCATATAAG 449132 Query 76385 GGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA-AGCT 76443 ||| ||| || |||||| | | || |||||||||||| || | ||| | | Sbjct 449133 GGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGTGG-AATGCAAAAGTAGATAA 449191 Query 76444 CAACTAC---GACTGGGATGTTCTCAAGGAACGCATCAAGGAGA-AGGGTCTTCGTAACA 76499 || || || |||||| | | || || || ||| | | | || | | || Sbjct 449192 TAAATATTGGGATTGGGATTTATTAAAAAAAAAAAT-AAGCATACATGGATTAAGAAATT 449250 Query 76500 GTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 76559 ||| | | ||||| ||||||||||| || || ||||||| ||||| |||||||||| Sbjct 449251 CACTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAATTTTGGGAAATAATGAAT 449310 Query 76560 GCTTTGAACCATACACAACAAACATCTAC 76588 ||||||||||| |||| ||||| ||| Sbjct 449311 CTTTTGAACCATATACAAGTAACATTTAC 449339 >seq2 Length=1580255 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 13811 CAAGATGTTTCTGAACTTCGCTATGGTCGTCTTATGATTATGACAGATGCCGATAATGAT 13870 |||||| || | |||| | |||||| | | ||||||||||| ||| ||| ||||| Sbjct 484876 CAAGATATTAAAGGACTTAGATATGGTTCTTTAATGATTATGACGGATCAGGATTATGAT 484935 Query 13871 GGTTCTCACATCAAGGGTCTCATCCTAAATATGATCCACTACTTCTGGCCCAGTCTT 13927 || ||||||||||||||| | | | |||||||| || | || |||||||||||| Sbjct 484936 GGATCTCACATCAAGGGTTTATTAATTAATATGATTCATAAATTTTGGCCCAGTCTT 484992 >seq5 Length=2497646 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/202 (69%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 175307 CGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATG 175366 ||||| | || || || ||||| || | | || | || || || || ||| |||||| Sbjct 1118997 CGGGTGAACCTGGAACAGGAAAAACATTAATTGCTAGGGCTATTGCAGGAGAAGCAAATG 1118938 Query 175367 TCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 | || || ||||| |||| || | |||| || |||||||||||||||||||| | Sbjct 1118937 TACCTTTTATCCAAGCATCTGGTTCAGAATTTGAAGAAATGTTTGTTGGTGTGGGTGCAA 1118878 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCA---ACCATGTATTGTCTTCA 175483 ||| | | || || ||| ||| ||| |||| || ||| || ||||| || | Sbjct 1118877 GAAGAATAAGAGAGCTTTTTCAAACCGC---AAAAAAGCATGCACCTTGCATTGTTTTTA 1118821 Query 175484 TTGATGAGATTGATGCGGTGGG 175505 ||||||| || ||||| || || Sbjct 1118820 TTGATGAAATAGATGCAGTTGG 1118799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566035496640