Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq11 208 1e-48 seq3 199 7e-46 >seq11 Length=923120 Score = 208 bits (230), Expect = 1e-48 Identities = 184/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| |||| | |||| ||| || || | ||||| ||||||||| || Sbjct 406273 ATACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCA 406214 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| ||||| ||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct 406213 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGG 406154 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| ||||| | ||| | |||| |||||||||||| | || Sbjct 406153 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCG 406094 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| ||||| || |||| ||||||||||| || ||||| Sbjct 406093 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 199 bits (220), Expect = 7e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| |||| | |||| ||| || || | ||||| ||||||||| || || Sbjct 406499 ACCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGA 406440 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| ||||| ||| |||||||||||||| |||||||||||||| ||||||||||| || Sbjct 406439 TAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGG 406380 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||||||||| ||||| | ||| | |||| |||||||||||| | || || Sbjct 406379 AATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGAC 406320 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| ||||| || |||| ||||||||||| || ||||| Sbjct 406319 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 190 bits (210), Expect = 4e-43 Identities = 165/205 (80%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| |||| | |||| ||| || || | ||||| ||||||||| || Sbjct 406045 ATACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCA 405986 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| ||||| ||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct 405985 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGG 405926 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| ||||| | ||| | |||| |||||||||||| | || Sbjct 405925 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCG 405866 Query 193311 ACTTCTAGAGTTATAGTTTTACCTG 193335 || || |||||||||||||| |||| Sbjct 405865 ACATCAAGAGTTATAGTTTTTCCTG 405841 >seq3 Length=1724855 Score = 199 bits (220), Expect = 7e-46 Identities = 172/213 (81%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||| ||| || || | ||||| ||||||||| || ||||| ||||| ||| || Sbjct 1545369 TACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTC 1545428 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||||||||| |||||||||| ||| ||||| ||||| || ||||||||||||||||| Sbjct 1545429 TAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTG 1545488 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | ||| | |||| |||||||||||| | ||||| || ||||| || ||||| Sbjct 1545489 AATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTT 1545548 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || |||| ||||||||||| ||||||||||| Sbjct 1545549 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1545581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899649024564960