Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 289 4e-73 seq11 168 1e-36 seq3 145 1e-29 >seq2 Length=1580255 Score = 289 bits (320), Expect = 4e-73 Identities = 577/842 (69%), Gaps = 19/842 (2%) Strand=Plus/Minus Query 17865 TTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 ||||| || ||| | ||| |||| || ||||||||||| ||||||| || ||||||||| Sbjct 1448308 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1448249 Query 17924 TTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT 17983 | ||| ||| ||||||||| | | | | || ||| ||| | || | Sbjct 1448248 TCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGT 1448189 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAGTAG 18042 |||||||| || |||||||| | |||||| ||||| || || ||||||| || | || Sbjct 1448188 AATCTATCAGCAACAAATTCAATATATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1448130 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | |||| || ||| ||||||| | |||||| ||||| | ||||| | ||| Sbjct 1448129 ATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTAT 1448070 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAA--TAAACAC 18160 ||| || || ||| |||||||| || | | || | ||||| ||| || Sbjct 1448069 ATTTTGAACAACTTCTTCTGGTAATTTATT--TTCT---AATAAACTATAAATTAAGCAA 1448015 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 ||||||||| |||| ||||||||||||| |||||||| |||||||| ||||| || Sbjct 1448014 TTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCA 1447955 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 | | | || | |||||| | |||||| || | ||||| | | ||| |||||| Sbjct 1447954 TGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATA 1447895 Query 18281 CCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTA-T 18339 || || || || || || | | ||||||||||||| | |||| | ||| || | Sbjct 1447894 CCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAA--GAATTTGTA--TCATTAAT 1447839 Query 18340 CCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAA 18399 |||||| |||||| | ||| || |||||| | || ||||||| || Sbjct 1447838 CCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGGAA 1447779 Query 18400 CAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTC 18459 |||| ||||||| |||||| |||||| | |||||||| ||| ||| |||| Sbjct 1447778 TAAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATATGTTTC 1447719 Query 18460 AGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTG 18519 ||||||||| |||| | |||||| |||||| |||||| | | || || || Sbjct 1447718 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTATTTC 1447659 Query 18520 AATCTCGCTATAAAATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 | || || ||||| || ||| ||||||| || ||||| || ||| | ||| | Sbjct 1447658 TACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCATCACTTGCTGCAA 1447600 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCA 18637 ||||||| ||||||| ||| || |||||||||||||| | || | ||| ||| | || Sbjct 1447599 AAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTA-ATTTTTCAAAATCT 1447541 Query 18638 TCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTG 18697 | | ||| |||||| ||||| |||||| | ||||||||| || | ||| || | |||| Sbjct 1447540 TTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTG 1447481 Query 18698 TA 18699 || Sbjct 1447480 TA 1447479 >seq11 Length=923120 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || || | || |||||| || Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||||| |||||||||||||| || || || || ||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406163 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || | |||||| |||||| ||||| ||||||||| Sbjct 406164 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406223 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | ||||| || |||||||||||||| ||| Sbjct 406224 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGGT 406271 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || || | || |||||| || Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||||| |||||||||||||| || || || || ||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406391 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || | |||||| |||||| ||||| ||||||||| Sbjct 406392 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406451 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | ||||| || |||||||||||||| ||| Sbjct 406452 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGGT 406499 Score = 147 bits (162), Expect = 3e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 ||||||||||| || | || |||||| || |||| |||| ||| || ||| ||| Sbjct 405843 GGAAAAACTATAACTCTTGATGTCGAACCATCCGATACTATTGAAAATGTTAAAGCAAAA 405902 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || || || || ||||||||||| |||| ||| || || || Sbjct 405903 ATTCAAGATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAACAA 405962 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 | |||||| |||||| ||||| ||||||||||| ||||| | || | ||||| Sbjct 405963 TTAGAAGATGGCAGAACATTATCTGATTATAATATTCAAAAAGAATCAACCTTACATTTG 406022 Query 156030 GTGTTAAGATTAAGAGGCGGT 156050 || |||||||||||||| ||| Sbjct 406023 GTTTTAAGATTAAGAGGTGGT 406043 >seq3 Length=1724855 Score = 145 bits (160), Expect = 1e-29 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 155788 TATTTATTGTTTATAATAAAAATTT----ATGTAATAAAATGCAAATATTTATTAAAACA 155843 ||||| || ||| | ||| | ||| || || ||||||||||| ||| | |||||| Sbjct 1545617 TATTTTTTTTTTTTCATATTACTTTTTACATTTACGAAAATGCAAATCTTTGTAAAAACA 1545558 Query 155844 TTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAA 155903 || || |||||||| || || | || || ||| || |||| |||| ||| || ||| Sbjct 1545557 TTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCCGATACTATTGAAAATGTTAAA 1545498 Query 155904 AATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGT 155963 ||||| |||||||||||||| || || || || ||||||||| | |||| ||| || Sbjct 1545497 GCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGACCAACAAAGACTAATTTTTGCTGGA 1545438 Query 155964 AAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 || || | |||||| |||||||||||| ||||||||||| Sbjct 1545437 AAACAATTAGAAGATGGCAGAACTTTATCTGATTATAATAT 1545397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731867627064800