Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 327 2e-84 seq11 208 2e-48 seq3 178 3e-39 seq5 84.2 4e-11 >seq2 Length=1580255 Score = 327 bits (362), Expect = 2e-84 Identities = 561/805 (70%), Gaps = 30/805 (4%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||||| ||| ||| |||||||||||| | || | || | ||| Sbjct 1448265 CTTGTAAAGATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAA-ACTTTAGAA 1448207 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | |||| || ||||||||| || |||||||||| |||||| ||||| | | Sbjct 1448206 CACCCTAAACATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTT 1448147 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | ||||||| | ||| ||||||| | | |||| ||| Sbjct 1448146 GAATTCATTCCAATTAAATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCA 1448087 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatt-taatatgatt 49810 || |||| ||||| ||| | | | | || || |||||||| || ||||| | Sbjct 1448086 ACTGCTTCTTTAACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAACT- 1448028 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| ||||| || |||||||||||||| ||| || || || || |||||||| Sbjct 1448027 ---ATAAATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATT 1447971 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | | ||||||| |||||| |||| ||||| Sbjct 1447970 ACTAAATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATTGCACAAAAAC 1447912 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | | | ||| |||||||| || ||||| ||| || | |||||| | |||| | | Sbjct 1447911 TTCCACTAAATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAA-AGAA 1447853 Query 49990 ATT-TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATA 50048 || |||||| || ||||| || |||||| |||||| ||||| || | |||||| Sbjct 1447852 TTTGTATCAT-TA--ATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATA 1447796 Query 50049 TTTTCTATAGCTTTAAAT-AATTCA-----tttttttCATNNNNNNNNNNNNNNNNNNNN 50102 ||||| ||||| | ||| |||| | | |||||||| Sbjct 1447795 TTTTCAATAGCATGGAATAAATTTAACCTTTCTTTTTCAT------CTTTAATATAATTA 1447742 Query 50103 NNNATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAA 50162 ||||||||| ||| |||||||||||| | ||| | |||||||||||| |||||| Sbjct 1447741 TCGATTAATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAA 1447682 Query 50163 AATTGTCTTGCTTC--TGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAG 50220 |||| | ||||||| | | | || ||||| || ||| | | ||||| || Sbjct 1447681 AATTTTTTTGCTTCAATTATTTCT--ACTTCTCTTAAAAATTTACTAGCCAAATTTTCTA 1447624 Query 50221 ATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCAT 50280 |||| || |||||| |||||| || ||||||||||| | ||| |||||||||||||||| Sbjct 1447623 ATACTATTCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCAT 1447564 Query 50281 TATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCC 50340 | | ||||| ||||| || || | ||| |||||||||| | |||||| ||||| Sbjct 1447563 TTACATTTAATTTTTCAAAATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCC 1447504 Query 50341 AAAATGATGCTACGGATTTTTTATA 50365 ||||||| ||| | | |||||| || Sbjct 1447503 AAAATGAAGCTTCAGCTTTTTTGTA 1447479 >seq11 Length=923120 Score = 208 bits (230), Expect = 2e-48 Identities = 184/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| || |||||||| || | ||||| |||||||||||| Sbjct 406273 ATACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCA 406214 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| |||| || |||||||| |||||||| |||||||| ||||||||||| Sbjct 406213 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGG 406154 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| ||| ||||| |||| ||| || | ||| Sbjct 406153 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCG 406094 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| |||||||||||||| | ||| |||||||| Sbjct 406093 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 199 bits (220), Expect = 8e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | ||| || |||||||| || | ||||| |||||||||||||| Sbjct 406499 ACCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGA 406440 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| |||| || |||||||| |||||||| |||||||| ||||||||||| || Sbjct 406439 TAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGG 406380 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| ||||| ||| ||||| |||| ||| || | ||| || Sbjct 406379 AATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGAC 406320 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| |||||||| |||||||||||||| | ||| |||||||| Sbjct 406319 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 168 bits (186), Expect = 1e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| || |||||||| || | ||||| |||||||||||| Sbjct 406045 ATACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCA 405986 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| |||| || |||||||| |||||||| |||||||| ||||||||||| Sbjct 405985 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGG 405926 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| ||| ||||| |||| ||| || | ||| Sbjct 405925 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCG 405866 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || ||||| || ||||| || Sbjct 405865 ACATCAAGAGTTATAGTTTTTCC 405843 >seq3 Length=1724855 Score = 178 bits (196), Expect = 3e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| |||||||| || | ||||| ||||||||||||||||| |||| |||| Sbjct 1545366 TATTACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATC 1545425 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || |||||||| |||||||| |||| ||| ||||| ||||| || |||||||||||||| Sbjct 1545426 TTCTAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATC 1545485 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| ||||| ||| ||||| |||| ||| || | ||| || || ||||| || || Sbjct 1545486 TTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGT 1545545 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||||||||| | ||| || |||||||| Sbjct 1545546 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1545581 >seq5 Length=2497646 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 129708 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 129766 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 732535 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 732593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984473970675300