Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 306 7e-78 seq11 199 7e-46 seq3 183 5e-41 seq5 84.2 4e-11 >seq2 Length=1580255 Score = 306 bits (338), Expect = 7e-78 Identities = 571/841 (68%), Gaps = 16/841 (2%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || || | |||| ||||||| || || ||||||||||||| ||| ||||||||| Sbjct 1448308 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1448249 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TATAA 38950 | ||| ||| |||||||||||| | || | || | ||| | | | ||| | || Sbjct 1448248 TCCATCCAATTAAATGGATTTTTAGAATGA-AAAACTTTAGAACACCCTAAACATTCTAG 1448190 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||| || |||||||||| |||||| |||| | | ||||||| || | ||| Sbjct 1448189 TAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCATTCCAATTAA 1448130 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | | ||||||| | ||| ||||||| | | |||| ||| || |||| ||||| ||| Sbjct 1448129 ATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTAT 1448070 Query 39071 cataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACATG 39129 | | | | || || |||||||| || ||||| | ||| | ||| || Sbjct 1448069 ATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAACT----ATAAATTAAGCAAT 1448014 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC-T 39188 |||||| ||||||| |||||| || || || |||||||||||||| ||||| || | Sbjct 1448013 TAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCAT 1447954 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 | ||| || | | ||||||| |||||| |||| |||||| | | ||| |||||| Sbjct 1447953 GTAATTTATTTTGT-TTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATA 1447895 Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATC 39308 || || ||||| ||| || | |||||| | ||| | ||||| | ||| |||| Sbjct 1447894 CCTTCTACACATGCATTAGCCACAATTCTTTCAGCAA--AAGAATTTGT-ATCATTAATC 1447838 Query 39309 CAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 39368 || || ||||| |||||| ||||| || | ||||||||||| ||||| | ||| Sbjct 1447837 CATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGGAAT 1447778 Query 39369 AATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCA 39428 || | | ||| ||||| Sbjct 1447777 AAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATATGTTTCA 1447718 Query 39429 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTC--TGAATACT 39486 ||||||| | ||| | |||||||||||| |||||||||| ||||||| | | | || Sbjct 1447717 GAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTATTTCT 1447658 Query 39487 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 39546 ||||| || ||| | | ||||| || |||| || |||||| |||||| | Sbjct 1447657 --ACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTTGCTGCAA 1447600 Query 39547 AGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATT 39606 | ||||||||||||| ||| ||||||||||||||||| | ||||| ||||| || || Sbjct 1447599 AAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAATCTT 1447540 Query 39607 CAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTAT 39666 | ||| |||||||||| | |||||| ||||||||| || ||| | | |||||| | Sbjct 1447539 TCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGT 1447480 Query 39667 A 39667 | Sbjct 1447479 A 1447479 >seq11 Length=923120 Score = 199 bits (220), Expect = 7e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| || |||||||| || | ||||| |||||||||||| Sbjct 406273 ATACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCA 406214 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || |||||||| ||||||||||||||||| ||||| ||||| Sbjct 406213 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGG 406154 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| |||||||| || | ||| Sbjct 406153 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCG 406094 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| |||||||||||||| | || |||||||| Sbjct 406093 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || ||| || |||||||| || | ||||| |||||||||||| || Sbjct 406499 ACCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGA 406440 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | || || |||||||| ||||||||||||||||| ||||| ||||| || Sbjct 406439 TAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGG 406380 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||||||||| ||||| ||| ||||| |||||||| || | ||| || Sbjct 406379 AATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGAC 406320 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| |||||||| |||||||||||||| | || |||||||| Sbjct 406319 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 163 bits (180), Expect = 5e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| || |||||||| || | ||||| |||||||||||| Sbjct 406045 ATACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCA 405986 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || |||||||| ||||||||||||||||| ||||| ||||| Sbjct 405985 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGG 405926 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| |||||||| || | ||| Sbjct 405925 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCG 405866 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || ||||| || ||||| || Sbjct 405865 ACATCAAGAGTTATAGTTTTTCC 405843 >seq3 Length=1724855 Score = 183 bits (202), Expect = 5e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| |||||||| || | ||||| |||||||||||| ||||||| || | || Sbjct 1545366 TATTACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATC 1545425 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || |||||||| ||||||||||||| ||| ||||||||||| || |||||||||||||| Sbjct 1545426 TTCTAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATC 1545485 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| ||||| ||| ||||| |||||||| || | ||| || || ||||| || || Sbjct 1545486 TTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGT 1545545 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| || ||||||||||| | || || |||||||| Sbjct 1545546 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1545581 >seq5 Length=2497646 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 109121 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 109179 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 732535 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 732593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905130591812400