Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11 251 2e-61 seq5 145 2e-29 seq14 105 2e-17 >seq11 Length=923120 Score = 251 bits (278), Expect = 2e-61 Identities = 802/1227 (65%), Gaps = 40/1227 (3%) Strand=Plus/Minus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||||||| |||| ||||||||||| || |||||| | | |||||| || | Sbjct 449085 TTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTAATTCTTTAGCTTCGT 449026 Query 155371 CAGATGTAAATGCGATATCCATCTTGAAA-----AATGTGTCGGCTAAACCCTGAACTCC 155425 ||||| | ||| |||||| || ||| ||||| || ||||| || || ||||| Sbjct 449025 CAGATTCATATG-GATATC----TTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 448971 Query 155426 AATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT----CTTCTTGT-TTGGGTAA 155480 || || | || |||||||| | ||| || || | |||||| |||||||| Sbjct 448970 TATTCCAATAGGTCGATGCCTTTTATT-----TGATTTTTCAGCTTCTTTAATTGGGTAA 448916 Query 155481 AAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAAT 155540 |||| |||||||| |||| ||||||| || | | || || | || |||| Sbjct 448915 TAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAAT 448856 Query 155541 TTCACATAGTCAAATG--TTTTATCCTC-ATTTACAAACATACCAAGACCAATAGACGCC 155597 || | | | |||| |||| | ||| || ||||| ||| | |||| || ||| Sbjct 448855 TTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCC 448796 Query 155598 AGATTACATACCGCAGTCTCCTTGTCGTC-GCTGTATTCTACAATCTCACAGCACAGGTT 155656 | |||||| || || || | | || | ||||||| | || ||||| || | ||| Sbjct 448795 AAATTACAAACAGCTA-CTTCATCAGGTGAGGTGTATTCAATTATTTCACAACATAAGTT 448737 Query 155657 AGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTA 155716 | || || || || |||||||| || || ||||||||| || || ||||| || || Sbjct 448736 ACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTTTATA 448677 Query 155717 TAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACG 155776 || || ||||| || || || || || | | || | ||| | || | Sbjct 448676 TAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAATCTTG 448617 Query 155777 GGCATTAATTTGCTTGTTGT----ATCTGCCTTCCGACTCATATTTCATATACAGCGTTC 155832 ||| | | | || || | | | |||| |||||||| |||| | | || Sbjct 448616 TGCAAGGACT-GTTTTTTTTCCTAAATTTTCTTCT---TCATATTTTGTATATAACTTTT 448561 Query 155833 GGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACC 155892 | || || || || | ||||| | || || || | || || || | | | || Sbjct 448560 CAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCC 448501 Query 155893 AAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAA 155952 | ||||||| | |||| | | |||||||| |||| ||||||||||||| || | Sbjct 448500 AGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATA 448441 Query 155953 GGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAA 156012 || | || || | || || | || ||||| || | || ||||| ||||| || Sbjct 448440 AATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAA 448381 Query 156013 TATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCT 156069 |||| | ||| |||||| | ||| | |||||| || || || || || ||| | Sbjct 448380 TATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCACCTT 448321 Query 156070 GATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAG 156129 |||||||||||| || || | ||| || || | || ||| |||| | |||||| || Sbjct 448320 GATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTTGATA 448261 Query 156130 TGCCATTGGTTCCGCGAATATGCGAAC-CAGATGAGCGAACATTATGAATATGTAGTCCA 156188 | ||||| ||||| | ||||| ||| | || | | || || | | | ||| Sbjct 448260 TACCATTAGTTCCTCTAATATAAGAATTCTGACCT-CTTATATCTTGTACAGCAACTCCT 448202 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 || || |||| |||| ||| ||| |||| |||| || | || ||||||||| Sbjct 448201 ATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATACCTTCA 448142 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 |||||||| || ||| |||| |||| | || || | ||| |||||||| ||||| Sbjct 448141 ATAGAATCTGATTTCATAGATAATAGAAAACAAGATGACATTTGCGGTCGTGGGGTTCCT 448082 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTC 156368 | || |||| ||| ||||| ||||| | ||||| || | |||||| ||| ||||| Sbjct 448081 GAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATGATATGT- 448023 Query 156369 TCCTTAATC-TTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATG 156427 | || || | || ||||||| | ||||| | || || || ||||| | | ||| Sbjct 448022 TTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAATAAATG 447963 Query 156428 CTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTT 156487 |||||||| || | ||| || |||||| | | |||| ||||| | |||||| Sbjct 447962 TTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAAAGTTTT 447903 Query 156488 AAACCCGAAATAATCAAACAGAAAATC 156514 ||| || ||||||||| | |||||| Sbjct 447902 AAATCCAAAATAATCATAATTAAAATC 447876 >seq5 Length=2497646 Score = 145 bits (160), Expect = 2e-29 Identities = 233/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || ||||| |||||| ||||| ||||| ||||| |||| | || || | || | | Sbjct 1118787 CTTCTTTTAGAACCAACTGCATCTATTTCATCAATAAAAACAATGCAAGGTGCATGCTTT 1118846 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | || || ||| | ||||||| | ||| || | ||||||| |||||||| || Sbjct 1118847 TTTGCGGTTTGAAAAAGCTCTCTTATTCTTCTTGCACCCACACCAACAAACATTTCTTCA 1118906 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | ||| |||| || || | |||||||||||| ||||| | ||||| || Sbjct 1118907 AATTCTGAACCAGATGCTTGGATAAAAGGTACATTTGCTTCTCCTGCAATAGCCCTAGCA 1118966 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | ||| || |||||||||||| ||| ||||| | || || || | |||||| Sbjct 1118967 ATTAATGTTTTTCCTGTTCCAGGTTCACCCGATAATAATATACCTTTGGGCAATTTTGCA 1119026 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| || |||| || | | |||||| | || | ||||| | |||||| | | Sbjct 1119027 CCAATTTTAGTAAATTTATCTGAATTTTTTAAATAATCAATTATTTCTTGAAGTTCTTGT 1119086 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | || ||||| ||| |||||| || ||||| Sbjct 1119087 TTTACTTCGTCACACCCTTTTACATCTGCTAAAGT 1119121 >seq14 Length=1633590 Score = 105 bits (116), Expect = 2e-17 Identities = 317/480 (66%), Gaps = 11/480 (2%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | || | || || ||||| |||||| ||| |||||| || Sbjct 1085015 CTATCAAATCTTCCTGGTCTTGTAATAGCAGGATCTAAAATATCGATTCTATTTGTTCCT 1084956 Query 288910 GCCAATACAACAA-TAGAT--TCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTT 288964 || || ||||| | | ||| | | | | || |||||||| || | || || | Sbjct 1084955 GCTAAAACAACTACTTGATCATTAGATGTATGGAACCCATCCAT--TTCTACAAGCATCT 1084898 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCtt 289023 | || || || | ||| |||||||||||| || | || | ||| | | | || | Sbjct 1084897 GGTTTAGAGTATTTTCTCTTTCATCATTTCCTCCACCTGCAAAACCTCCCTTTGATC-TC 1084839 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||| | ||||||||||| ||||| || || ||||| | | | || | || || ||| || Sbjct 1084838 TTTCTCCCAACAGCATCTATTTCATCTATAAAAATAATAGATGGTGCATGTTTTCTTGCT 1084779 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | ||||||||||| || | |||| ||| | || ||| | | ||| | ||| ||| Sbjct 1084778 TGAGAAAATAATTCTCGGACTCTTGATGGTCCTATTCCTACAAATACTTCAATAAAATCA 1084719 Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | | || || | ||||| ||||| || || || || | || | | | Sbjct 1084718 CTTCCACTAATATTAAAAAAAGGAACATTAGCTTCTCCAGCAACAGCTTTTGCTAATAAT 1084659 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || || || ||||| |||| || ||||| | || ||||||| |||||| || | Sbjct 1084658 GTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGCACC-TAA 1084600 Query 289264 GACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 |||| |||||| | || | || ||||| || |||| |||| || ||| | |||||| Sbjct 1084599 TACTTGATATTTTGCTGGATTTTTCAAAAAGTCAACAAATTCCATAATTTCTTCTTTTGC 1084540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808586037086