Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 125 6e-24 >seq3 Length=1724855 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| ||||||| ||||| || || || || || ||| | || Sbjct 1545578 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 1545519 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||| || ||||| ||||||||||| || || || ||| Sbjct 1545518 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGACCAA 1545459 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || ||||| || ||||| | || ||| |||| | || |||||||| Sbjct 1545458 CAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTATAAT 1545399 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| || |||| ||||| Sbjct 1545398 ATTCAAAAAGAATCAACCTTACATTTGGT 1545370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894911861840