Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq11 215 8e-51 seq3 203 5e-47 >seq11 Length=923120 Score = 215 bits (238), Expect = 8e-51 Identities = 184/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||||||||| |||||||| || ||| ||||||| |||| || Sbjct 406273 TGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCCG 406332 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| ||||| ||| ||||||||| ||||| || ||||||| Sbjct 406333 ATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAAC 406392 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| ||||| ||| | |||||||||| Sbjct 406393 AAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAATA 406452 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||||||||| || | ||||| || ||| |||||||||||||| Sbjct 406453 TTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGGT 406499 Score = 214 bits (236), Expect = 3e-50 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||||||||| |||||||| || ||| ||||||| |||| || Sbjct 406045 TGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCCG 406104 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| ||||| ||| ||||||||| ||||| || ||||||| Sbjct 406105 ATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAAC 406164 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| ||||| ||| | |||||||||| Sbjct 406165 AAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAATA 406224 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | ||||| || ||| |||||||||| |||| Sbjct 406225 TTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGGTA 406272 Score = 192 bits (212), Expect = 9e-44 Identities = 165/204 (81%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 146056 CAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATA 146115 |||||||||| || ||| ||||||| |||| |||||||||| ||||||| ||| | Sbjct 405841 CAGGAAAAACTATAACTCTTGATGTCGAACCATCCGATACTATTGAAAATGTTAAAGCAA 405900 Query 146116 AAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAAC 146175 |||| ||| ||||||||| ||||| || |||||||||||| | |||||||| || |||| Sbjct 405901 AAATTCAAGATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAAC 405960 Query 146176 AATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATT 146235 ||||||| ||| ||||| ||| | ||||||||||| ||||||||||| || | |||| Sbjct 405961 AATTAGAAGATGGCAGAACATTATCTGATTATAATATTCAAAAAGAATCAACCTTACATT 406020 Query 146236 TAGTATTACGATTAAGAGGAGGTA 146259 | || ||| |||||||||| |||| Sbjct 406021 TGGTTTTAAGATTAAGAGGTGGTA 406044 >seq3 Length=1724855 Score = 203 bits (224), Expect = 5e-47 Identities = 172/212 (81%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| ||||||||||| ||| ||||||| |||| || Sbjct 1545577 TGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCCG 1545518 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| ||||| ||| ||||||||| ||||| || || |||| Sbjct 1545517 ATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGACCAAC 1545458 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| || ||||||||||| ||| ||||| ||| | |||||||||| Sbjct 1545457 AAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTATAATA 1545398 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTA 146243 | ||||||||||| || | ||||| ||| || Sbjct 1545397 TTCAAAAAGAATCAACCTTACATTTGGTAATA 1545366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786161702655760