Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq8 116 5e-21 seq13 84.2 3e-11 >seq8 Length=590521 Score = 116 bits (128), Expect = 5e-21 Identities = 163/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 192930 GAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGT---TACCACAGATATT 192986 || ||| || ||||| |||| |||||||||||||||| | || ||| | || || Sbjct 431205 GATACATTAGCTCATTTATTATATTATCCACAAAAACCATTAGTATGTACAAAAGCTACC 431264 Query 192987 GCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCT 193046 | || ||||| | || | |||| ||| |||||||||||| ||||| || ||| Sbjct 431265 G-AATATTTAC--ATTTTAAAGATTTACCAGCTGGTATTAATGCAATTGTAGCAATAATG 431321 Query 193047 TGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGA 193106 || ||||| || ||||| |||||||| ||| | ||| | ||| || | |||||||| | Sbjct 431322 TGTTATACAGGATATAACCAAGAAGATAGTTTAATTATGAATCAATCGTCTATTGATCGG 431381 Query 193107 GGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGAAA 193152 || |||||| | | | || |||| ||||||||| |||||||| Sbjct 431382 GGTTTATTTAGAAGTGTATTTTATCGTACATATACGAGTGAAGAAA 431427 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 193790 TAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 193849 |||||| |||||||| ||||| | |||||| | | ||||||||||| | |||||||| Sbjct 432425 TAAAATATTTATAGGACCAACATTTTATCAAAGGTTAAAACATATGGTAGAAGATAAAAT 432484 Query 193850 GCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193908 ||||| |||||| || | | |||| ||||| ||||||||| ||||| | Sbjct 432485 ACATGCCAGAAGTAGAGGGCCTTTAACTATGATTACA-AGACAACCAACAGAAGGTCGAT 432543 Query 193909 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGA 193942 | || ||| ||| || ||||||| |||||||| Sbjct 432544 CAAGAGATGGTGGTCTACGATTTGGTGAAATGGA 432577 >seq13 Length=1355380 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 ||||| ||| | ||| | |||||||||||||||||||||| ||||||||||| |||||| Sbjct 333242 AATTTAGCTGTAACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAACTTACAT 333183 Query 52029 GTTCCTCAATCATATG 52044 | |||||||| ||| Sbjct 333182 TTAGCTCAATCACATG 333167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635173804813840