Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq12 120 4e-22 seq2 96.9 5e-15 seq8 95.1 2e-14 >seq12 Length=816096 Score = 120 bits (132), Expect = 4e-22 Identities = 431/657 (66%), Gaps = 28/657 (4%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| |||||| |||| ||| | ||| | | |||||||||||| || ||||||| | Sbjct 647537 AATTTAATTTAAATGAAT--ATTTT-CCATTATTAACAACAAAAAAATTA-TTTATAAGA 647592 Query 180417 A-TATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAAT---TTGTTA 180472 |||| | |||||||||| ||| | || | ||| ||||||| ||| |||||| Sbjct 647593 GGTATTATCGAAGAATTATTGTGGTTTATAAGAGGGGAAACAAATGGAAATACTTTGTTA 647652 Query 180473 AATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGT 180532 | | | | | | | | ||| | | |||||| | | | ||||||||| | | Sbjct 647653 GAAAAAAACG---TAAGAATATGGGAAGCTAATGGAACAAGGGAATTTTTAGATAATAGA 647709 Query 180533 GGATTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGAC 180590 ||| |||| | || ||| |||| | || ||||||||||||||||||||||| | Sbjct 647710 AAATT--ATTTCATAGAGAAGTTAATGATCTCGGTCCAATTTATGGATTTCAATGGAGGC 647767 Query 180591 ATGCAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAA 180649 || || ||| |||||| || | || || || |||| | |||| | || ||| Sbjct 647768 ATTTTGGTGCTGAATATACAGA-TATGCATGATAATTATAAAGACAAAGGAGTTGATCAA 647826 Query 180650 TTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGAT 180709 |||| | ||||| | || |||||| |||| || || |||| || | | Sbjct 647827 TTAAAAAATATTATAAATTTAATTAAAAATGATCCTACTTGTAGACGAATTATTTTGTGT 647886 Query 180710 AGTTGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAA 180769 ||||||||| | | ||| | ||||| | || || ||||| ||| ||| Sbjct 647887 GCATGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAA 647946 Query 180770 TTTTATG--TTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATT 180827 ||||||| || || |||||| | ||| |||||||||||||| |||| Sbjct 647947 TTTTATGTTTTTGACGGAAAATTATCATGTATT-----ATGTATCAAAGATCTTGTGATT 648001 Query 180828 TAGGATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTC 180885 |||| | || || |||| |||||||||| |||||| || ||| ||| || | | | Sbjct 648002 TAGGGCTTGGGGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGATAGCAC 648061 Query 180886 AAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATA 180945 |||| || || ||| | | ||||||| || || || ||| |||||| || Sbjct 648062 -AAGT-ATGTAACTTACAGGCAGCTGAATTTATACATGTATTGGGTAATGCTCATGTTTA 648119 Query 180946 TTCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAAACCCTTACAAGTTTCC 181002 | ||| |||||||| ||||| ||||| |||| |||| |||||| ||||| Sbjct 648120 TAATAATCATATTGAAAGCTTAAAGATTCAGTTAAATAGAACTCCTTACCCTTTTCC 648176 >seq2 Length=1580255 Score = 96.9 bits (106), Expect = 5e-15 Identities = 176/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 ||| |||||||| | ||||| ||||||||||| | || ||| | ||||| || Sbjct 485490 TAAAGTTGCTCAACTTGTAGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAGTC 485549 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | ||||||| ||||| | || || ||||| ||| |||||||||||| Sbjct 485550 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 485609 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || | |||||| || || ||||||| |||| ||||| ||||||||| || | || Sbjct 485610 TTTTTTAGAACCATGCGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 485669 Query 173068 ATCAAGGTATATTTATACTAAAC-CGCATAAAATTTTAAAATATATATTTAGAGAAGAAG 173126 | | || ||||| | ||| |||| |||| | || || |||||||| ||| | | Sbjct 485670 AGCTAGATATATATTTACAAAACTTGCATCATCCACTAGAA-GTATATTTAATGAATATG 485728 Query 173127 ATGACCCTATTTTAA 173141 |||| || ||||||| Sbjct 485729 ATGATCCGATTTTAA 485743 >seq8 Length=590521 Score = 95.1 bits (104), Expect = 2e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 201917 TAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 201976 |||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 432425 TAAAATATTTATAGGACCAACATTTTATCAAAGGTTAAAACATATGGTAGAAGATAAAAT 432484 Query 201977 GCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGT 202035 ||||| |||||| || | |||| | |||||| | ||||||| ||||| | Sbjct 432485 ACATGCCAGAAGTAGAGGGCCTTTAACTATGATTACA-AGACAACCAACAGAAGGTCGAT 432543 Query 202036 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 | || |||||| || ||||||| ||||||||| |||||||| Sbjct 432544 CAAGAGATGGTGGTCTACGATTTGGTGAAATGGAACGGGATTGTAT 432589 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 201146 TGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGT 201205 |||||||||||||||||||||||| ||||| || ||||| || |||||||||||| | Sbjct 431294 TGGTATTAATGCAATTGTAGCAATAATGTGTTATACAGGATATAACCAAGAAGATAGTTT 431353 Query 201206 TATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 ||| | ||| || | |||||||| | |||||||| Sbjct 431354 AATTATGAATCAATCGTCTATTGATCGGGGTTTATT 431389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655276084702000