Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq11 208 1e-48 seq3 199 8e-46 >seq11 Length=923120 Score = 208 bits (230), Expect = 1e-48 Identities = 183/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || | | ||| || || | || |||||||| || |||||||||||||| Sbjct 406499 ACCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGA 406440 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || ||||||| ||||||||||||||| |||| |||||||||||| || || Sbjct 406439 TAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGG 406380 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||||||||| |||||||| ||||||||||| ||||| ||||| || Sbjct 406379 AATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGAC 406320 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||| || || || || || || |||||||| |||||||| Sbjct 406319 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 206 bits (228), Expect = 5e-48 Identities = 183/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | | ||| || || | || |||||||| || ||||||||||||| Sbjct 406272 TACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAG 406213 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| || ||||||| ||||||||||||||| |||| |||||||||||| || | Sbjct 406212 ATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGG 406153 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| |||||||| ||||||||||| ||||| ||||| | Sbjct 406152 GAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGA 406093 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | |||||| || || || || || || |||||||| |||||||| Sbjct 406092 CATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 183 bits (202), Expect = 6e-41 Identities = 163/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | | ||| || || | || |||||||| || ||||||||||||| Sbjct 406044 TACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAG 405985 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| || ||||||| ||||||||||||||| |||| |||||||||||| || | Sbjct 405984 ATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGG 405925 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| |||||||| ||||||||||| ||||| ||||| | Sbjct 405924 GAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGA 405865 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 | || | |||||| || || |||| Sbjct 405864 CATCAAGAGTTATAGTTTTTCCTG 405841 >seq3 Length=1724855 Score = 199 bits (220), Expect = 8e-46 Identities = 163/198 (82%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || |||||||| || |||||||||||||||| | |||| || ||||||| |||||||||| Sbjct 1545382 GTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 1545441 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 ||||| |||||||||||||| || || || |||||||| ||||||||||| |||||||| Sbjct 1545442 GCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGAATTTTTGCTTTA 1545501 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||||||||| ||||| ||||| || || | ||| || || || || || || || Sbjct 1545502 ACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1545561 Query 82794 TTTACAAATATCTGCATT 82811 |||||||| || |||||| Sbjct 1545562 TTTACAAAGATTTGCATT 1545579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981821186922042