Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3 104 4e-17 seq11 95.1 2e-14 >seq3 Length=1724855 Score = 104 bits (114), Expect = 4e-17 Identities = 101/132 (77%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || |||||||||||||||| |||||| | |||||||| ||| Sbjct 1545386 ATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCAGCAA 1545445 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||||||||||||| | || | ||| |||| ||||||||||| |||||||| | || Sbjct 1545446 AAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGAATTTTTGCTTTAACAT 1545505 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 1545506 TTTCAATAGTAT 1545517 >seq11 Length=923120 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || |||||||||||||||| ||||| | |||||||| ||| Sbjct 406008 ATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAA 405949 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | || | || |||| ||||||||||| |||||||| | || Sbjct 405948 AAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACAT 405889 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 405888 TTTCAATAGTAT 405877 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || |||||||||||||||| ||||| | |||||||| ||| Sbjct 406236 ATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAA 406177 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | || | || |||| ||||||||||| |||||||| | || Sbjct 406176 AAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACAT 406117 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 406116 TTTCAATAGTAT 406105 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || |||||||||||||||| ||||| | |||||||| ||| Sbjct 406464 ATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAA 406405 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | || | || |||| ||||||||||| |||||||| | || Sbjct 406404 AAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACAT 406345 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 406344 TTTCAATAGTAT 406333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903405802118080