Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq11 298 1e-75 seq2 197 3e-45 seq12 127 5e-24 seq13 105 2e-17 seq5 105 2e-17 >seq11 Length=923120 Score = 298 bits (330), Expect = 1e-75 Identities = 620/913 (68%), Gaps = 29/913 (3%) Strand=Plus/Plus Query 110263 TAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTC 110322 ||||||| || |||||||| | || | | || ||| |||||||| || |||||| Sbjct 447850 TAAATAAAGAAATAGATTATACAAGGGATTTTAATTATGATTATTTTGGATTTAAAACTT 447909 Query 110323 TTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGT 110382 | ||||| | |||||| | || | ||| | || ||||||||||||||||| | | Sbjct 447910 TAGAACGATCATATTTATTACGAATTAATAATAAAATTATTGAACGTCCTCAACATTTAT 447969 Query 110383 TTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT---AAAGCTGTTATTGAATGTT 110439 | | | || | ||||| |||||| | ||||| || |||||| ||| ||| | Sbjct 447970 TAATGAGAGTGTCAATTGGAATTCATATAGATGATCTTGAAAAAGCT-TTA--GAAACAT 448026 Query 110440 ATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAA 110499 || || || | | |||| | | |||||||| || || ||||||| |||||| Sbjct 448027 ATCATTTAATGTCTCAAAAATATTTCACACATGCTACACCCACATTATTTAATTCAGGAA 448086 Query 110500 CTAATGGAGGACAATTGGCTTCTTGCTTTCT----TCTAGGAATTAACGATGATTCTATT 110555 | || ||| || | ||||| ||||| |||| ||| | | ||||||||| Sbjct 448087 CCCCACGACCGCAAATGTCATCTTGTTTTCTATTATCTATGAAATCA----GATTCTATT 448142 Query 110556 GAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATT 110615 |||||||| | ||| | | ||| || |||| | ||| ||||| | || || || Sbjct 448143 GAAGGTATATTTGAAACATTAAAACAATGTGCTTTGATTAGTAAAACAGCAGGCGGCATA 448202 Query 110616 GGTATTCACGTTCATGATATTCGC--TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG 110673 || || || || ||||| | ||| || | |||| | | | || ||| Sbjct 448203 GGAGTTGCTGTACAAGATATAAGAGGTCAGAATT--CTTATATTAGAGGAACTAATGGTA 448260 Query 110674 CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATC 110733 |||| ||| | |||||||||||||| || || || || || |||| ||||| ||| Sbjct 448261 TATCAAATGGTTTAGTTCCAATGTTAAGGGTTTTTAATGATACGGCAAGGTATGTAGATC 448320 Query 110734 AAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATA 110790 ||||||| || ||||| || || ||||| | ||| | || || ||||||||||||| Sbjct 448321 AAGGTGGAGGGAAAAGAAAAGGATCTTTTGCAGTATATATAGAGCCATGGCATTCAGATA 448380 Query 110791 TATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATT 110850 | |||||||| ||||| | | |||||||| || |||||| |||||| || |||| Sbjct 448381 TTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTCGAGATT 448440 Query 110851 TATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGT 110910 |||||||||| || ||| | | |||||||| |||||| | || |||||||| | | Sbjct 448441 TATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAAAAACT 448500 Query 110911 GGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTG 110970 || || | ||||||||| || | ||| ||| || ||| | ||| | || |||| Sbjct 448501 GGACTTTAATGTGTCCTAATGAATGTCCAGGTTTAAGTGAATCTTGGGGAGACGAATTTG 448560 Query 110971 AAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTC 111027 || | | || |||||||||| ||||| || || | ||| ||| | | || | Sbjct 448561 AAAAGTTATATACAAAATATGAAGAAGAA---AATTTAGGAAAAAAAACAGTCCTTGCAC 448617 Query 111028 AAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGT 111087 |||| | ||||| || | || ||| |||||||||| || ||||| || | Sbjct 448618 AAGATTTATGGTTTGCTATATTACAAAGTCAAATTGAAACTGGTGTACCATATATGTTAT 448677 Query 111088 ATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGT 111146 |||||||| ||| ||| ||||||||||||| ||||||||||||||||| | |||| Sbjct 448678 ATAAAGATGCAT-GCAATTCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGT 448736 Query 111147 AATTTGTGCTGTG 111159 || || || |||| Sbjct 448737 AACTTATGTTGTG 448749 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || ||||||||||||| | || || |||||| || Sbjct 448869 ACTAAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAA 448928 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||| || | || ||||| | |||| |||| ||||| || || |||||||||||||| Sbjct 448929 GAAGCTGAAAAATCAAATAAAAGGCATCGACCTATTGGAATAGGAGTACAAGGATTAGCA 448988 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 ||| ||||||| | | || ||| | ||| |||||| |||||| |||||| || Sbjct 448989 GATACATTTATGCTTTTAAGATATCCATATGAATCTGACGAAGCTAAAGAATTAAATAAA 449048 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCT 112790 | || || || ||||| |||| || ||| Sbjct 449049 AGAATATTTGAGACAATGTATTATGCGGCT 449078 >seq2 Length=1580255 Score = 197 bits (218), Expect = 3e-45 Identities = 556/845 (66%), Gaps = 9/845 (1%) Strand=Plus/Plus Query 131437 TCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGGAC 131496 ||| |||| | ||| || |||| || | || || ||| ||| || | || ||||| Sbjct 1447448 TCCTATTATATATCCTGAAGTTTGGAATTTTTACAAAAAAGCTGAAGCTTCATTTTGGAC 1447507 Query 131497 TGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGAATGA 131556 | |||||| || ||| | | | ||| | | |||| |||||||||| | ||||| Sbjct 1447508 AGCTGAAGAAATTGATTTATCAAGTGATTTGAAAGATTTTGAAAAATTAAATGTAAATGA 1447567 Query 131557 AAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGA 131616 |||| ||||| | | ||| | ||||| || || | ||||||||| || || | || Sbjct 1447568 AAAACATTTTATAAAACATGTTTTAGCATTTTTTGCAGCAAGTGATGGAATAGTATTAGA 1447627 Query 131617 AAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGTTCTACAC 131676 |||| | | || ||| || | |||| | || || ||||| || | || || | Sbjct 1447628 AAATTTGGCTAGTAAATTTTTAAGAGAAGTAGAAATAATTGAAGCAAAAAAATTTTATTC 1447687 Query 131677 ATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCT 131736 |||||| ||||||||| ||| ||| || | ||| ||||| || || | | Sbjct 1447688 TTTTCAAATAGCTGTTGAAAATATACATTCTGAAACATATAGTTTATTAATCGATAATTA 1447747 Query 131737 TGTTAAAAATGAAGATGATAAAAATAAATT-ATTTGATGCTGTAAATAAATTTCCTGCAA 131795 | ||||| ||||| | || || |||||| ||| ||||| | | || | || |||| Sbjct 1447748 TATTAAAGATGAAAAAGA-AAGGTTAAATTTATTCCATGCTATTGAAAATATACCAGCAA 1447806 Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTA 131855 | ||||| |||||| ||||||| |||||||||| | |||| | | |||| || Sbjct 1447807 TAAAAAATAAAGCATTATGGGCTGCTAAATGGATTAA---TGATACAAATTCTTTTGCTG 1447863 Query 131856 CAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTA 131915 |||| |||| ||| ||| ||||| ||||||||||| ||| || ||| ||||| | Sbjct 1447864 AAAGAATTGTGGCTAATGCATGTGTAGAAGGTATATTATTTAGTGGAAGTTTTTGTGCAA 1447923 Query 131916 TCTTTTGGCTTAAGAAGCGTGGATTGA-TGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 | |||||| |||| || | || | | | ||| | |||| ||| |||| || Sbjct 1447924 TTTTTTGGTTTAAAAAAC-AAAATAAATTACATGGTTTAACATTTAGTAATGAATTAATT 1447982 Query 131975 TCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGAT 132034 |||||||||| | |||||||| ||| | ||||| ||||| ||| | || Sbjct 1447983 AGCAGAGATGAAGGTCTACATACTGATTTTAATTGCTTAATTTATAGTTTATTAGAAAAT 1448042 Query 132035 AAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAG 132094 ||| | ||| | | || || | | | | ||||||||||| | |||| Sbjct 1448043 AAATTACCAGAAGAAGTTGTTCAAAATATAGTTAAAGAAGCAGTTGAAGTAGAGAGATCA 1448102 Query 132095 TTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGC-TGACTCTATGAAGGA 132153 |||||| ||| |||| || || |||| ||||| |||||| | |||| |||| | Sbjct 1448103 TTTATTTGTGAATCTTTACCATGTGATTTAATTGGAATGAATTCAAGACT-TATGTCTCA 1448161 Query 132154 GTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAA 132213 || |||||||| ||||||||| | ||| | | | || | ||| || ||| | | Sbjct 1448162 ATATATTGAATTTGTTGCTGATAGATTACTAGAATGTTTAGGGTGTTCTAAAGTTTTTCA 1448221 Query 132214 CACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTT 132273 | |||| || | || |||||||| | ||| || | |||| ||||| || ||||| Sbjct 1448222 TTCTAAAAATCCATTTAATTGGATGGATTTAATATCTTTACAAGGAAAAACAAATTTCTT 1448281 Query 132274 CGAAA 132278 |||| Sbjct 1448282 TGAAA 1448286 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 || |||| ||| || ||| | || || || || |||| | | | || |||||||| Sbjct 1116374 AAAATTTGAAATGAACACATTAATGTTTCATCAACACTCATCATAGCCCCTGCATTATCA 1116433 Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAA 167320 || || | | || |||||||| || ||||||| ||||||||||| | || ||| || Sbjct 1116434 AACTC-TCCACAATAATTTGGAGCCGAAAATAAAGTAACTAATTGTCTTTTCGCAAAAAA 1116492 Query 167321 TTCATAACCATCTTCAACAACTTCATGGGCACGTATTACAAGTTCAA-CTCCTAtttttt 167379 |||||||||||| |||||||||| || || | || ||| |||| || | |||| | Sbjct 1116493 TTCATAACCATCCTCAACAACTTGGTGTGCTCTGCATATAAGATCAAGTTCATGTTTTCT 1116552 Query 167380 tAAGAAAATTA 167390 ||| ||||||| Sbjct 1116553 TAA-AAAATTA 1116562 >seq12 Length=816096 Score = 127 bits (140), Expect = 5e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||||||||||||||||||||| | |||||||| ||| | ||| ||||| Sbjct 647954 ACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACA 647895 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAA 59056 |||||||||| |||||||| || | | || ||| ||||||||||| | | | | | Sbjct 647894 TTCCATGCACACAAAATAATTCGTCTACAAGTAGGATCATTTTTAATTAAATTTATAATA 647835 Query 59057 TGTTTTATTTGGTCAAATCCATT 59079 | ||||| ||| |||| ||| || Sbjct 647834 TTTTTTAATTGATCAACTCCTTT 647812 >seq13 Length=1355380 Score = 105 bits (116), Expect = 2e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| ||| | |||| | | || ||| | ||||||||| | ||||||||| Sbjct 333353 AGACATATGACTGATGAAGATTACATATTATTTAATCGACAACCATCATTACATAAAATG 333294 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| || |||| ||| |||| || | |||||||| |||||| || | Sbjct 333293 AGTATTATGGGACACAAAGCTAAAATATTGCCTTATTCTACATTTCGTTTAAATTTAGCT 333234 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || |||||||| ||||||||||| ||||||||||| | ||| || ||||| Sbjct 333233 GTAACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAACTTACATTTAGCTCAA 333174 Query 305486 TCA 305488 ||| Sbjct 333173 TCA 333171 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 306249 ATAGAACATTACCATTATTTAGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATAT 306308 ||||| |||||||| |||| ||||||||| |||| ||| | | ||||| ||| Sbjct 332053 ATAGATCATTACCACATTTTATCAAATTTGATTATGGGCCAGAAAGTAGAGGATTTGTAT 331994 Query 306309 CAAGTTC--ATTTAAACAAGGACTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGG 306366 | | ||| |||||| || || | || ||| || |||||||| || | || Sbjct 331993 CGAATTCTTATTTAAGT--GGGTTAACACCACAAGAAGTTTTTTTTCATGCTATGGGAGG 331936 Query 306367 ACGTGACGGTGTTATTGATACTGCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAA 306426 | || ||| ||||||||||||||||||| || || | ||||||| | ||||||| Sbjct 331935 TAGAGAAGGTATTATTGATACTGCTTGTAAAACTTCAGAAACTGGTTATATACAAAGAAG 331876 Query 306427 ATTAATGAAAACGCTTGAAGAT 306448 |||||| ||| | | |||||| Sbjct 331875 ATTAATTAAAGCTATGGAAGAT 331854 >seq5 Length=2497646 Score = 105 bits (116), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| || ||||| | ||| |||||||| ||| |||||||| ||| Sbjct 1721662 TTTAATAGACAGCCATCTTTACATCGTATGTCTATTATGTGTCATAAAGCTCGAGT---- 1721607 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| ||||| ||||||||||| ||||| Sbjct 1721606 TATGGATTATAAAACATTTCGTTTTAATGAATGTGTTTGTAGCCCTTATAATGCAGATTT 1721547 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||| || || ||||||||| |||||||||||||| Sbjct 1721546 TGACGGGGACGAAATGAATTTGCATGTACCTCAA 1721513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186805531513358