Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3 102 2e-16 >seq3 Length=1724855 Score = 102 bits (112), Expect = 2e-16 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| |||||| | || || ||| || || || | ||| Sbjct 1545563 AAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCCGATACTATTGAAAAT 1545504 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| |||||||||||| || ||| |||||||| || || Sbjct 1545503 GTTAAAGCAAAA-ATTCAAGATAAAGAAGGAATTCCCCCTGACCAACAAAGACTAATTTT 1545445 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || || |||||||| || ||||| | ||||| || | || ||||| || Sbjct 1545444 TGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTATAATATTCAAAAAGAATC 1545385 Query 206364 TAC 206366 || Sbjct 1545384 AAC 1545382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181813562086238