Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq11 116 4e-21 seq3 93.3 4e-14 >seq11 Length=923120 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATC 131970 ||||||||||||| | |||| ||||||||||| || || || | | ||| | || | || Sbjct 406255 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCA-TC 406197 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | ||||| || | | | |||| | |||||||| || || || ||||||||||| Sbjct 406196 TTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATC 406137 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||||||| ||| | | ||| | |||||||| || || || || | || | || Sbjct 406136 TTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGT 406077 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| ||||| | ||||||| ||||||||||| Sbjct 406076 TTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATC 131970 ||||||||||||| | |||| ||||||||||| || || || | | ||| | || | || Sbjct 406483 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCA-TC 406425 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | ||||| || | | | |||| | |||||||| || || || ||||||||||| Sbjct 406424 TTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATC 406365 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||||||| ||| | | ||| | |||||||| || || || || | || | || Sbjct 406364 TTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGT 406305 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| ||||| | ||||||| ||||||||||| Sbjct 406304 TTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATC 131970 ||||||||||||| | |||| ||||||||||| || || || | | ||| | || | || Sbjct 406027 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCA-TC 405969 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | ||||| || | | | |||| | |||||||| || || || ||||||||||| Sbjct 405968 TTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATC 405909 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||||||| ||| | | ||| | |||||||| || || || || | || | || Sbjct 405908 TTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATAGT 405849 Query 132091 TTTACC 132096 ||| || Sbjct 405848 TTTTCC 405843 >seq3 Length=1724855 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||||| | |||| ||||||||||| || || || | | | | | || | ||||| Sbjct 1545370 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCA-TCTTC 1545428 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| || | | | ||||| | ||||| || || || || ||||||||||| Sbjct 1545429 TAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTG 1545488 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||||| ||| | | ||| | |||||||| || || || || | || | ||||| Sbjct 1545489 AATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTT 1545548 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || | ||||||| || || ||||| Sbjct 1545549 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1545578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608352248080