Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq11 168 6e-37 seq3 149 6e-31 >seq11 Length=923120 Score = 168 bits (186), Expect = 6e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||||||||| |||||| | || || | || |||||| | | Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| ||||||| |||||||| ||||| || || ||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406391 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| | || |||||| | ||||||| |||| | ||||| ||| Sbjct 406392 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406451 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCATTC 25414 |||||||||||||| ||| | ||||| || |||||||| |||||||| | ||||||| Sbjct 406452 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGGTTGCTAATCATTC 406511 Query 25415 GAT 25417 ||| Sbjct 406512 GAT 406514 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||||||||| |||||| | || || | || |||||| | | Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| ||||||| |||||||| ||||| || || ||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406163 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| | || |||||| | ||||||| |||| | ||||| ||| Sbjct 406164 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406223 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| ||| | ||||| || |||||||| ||||| || Sbjct 406224 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGG 406270 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAA 25261 |||||| | || || | || |||||| | ||||||||| || | || ||| |||| Sbjct 405843 GGAAAAACTATAACTCTTGATGTCGAACCATCCGATACTATTGAAAATGTTAAAGCAAAA 405902 Query 25262 ATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAA 25321 ||| |||||||| ||||| || || ||||| |||||| | |||| | || |||||| Sbjct 405903 ATTCAAGATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAACAA 405962 Query 25322 CTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTA 25381 | ||||||| |||| | ||||| ||||||||||||||||| ||| | ||||| Sbjct 405963 TTAGAAGATGGCAGAACATTATCTGATTATAATATTCAAAAAGAATCAACCTTACATTTG 406022 Query 25382 GTGTTAAGATTGAGAGGAGG 25401 || |||||||| ||||| || Sbjct 406023 GTTTTAAGATTAAGAGGTGG 406042 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/228 (70%), Gaps = 9/228 (4%) Strand=Plus/Minus Query 137822 TTAGACCCGGACACTCGTCGGGACACATCAACGACCA--TTTTCCTCCCGTCCTAACCCT 137879 ||| ||| ||||| || | |||||||| || | ||| |||| | | | | || || Sbjct 448536 TTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTTTTTATTTTCTT--TTACTCT 448479 Query 137880 TTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGC-CTTCATATCTT 137938 || ||| || | | ||| ||| |||||| ||| | || ||||| ||| || |||| Sbjct 448478 TTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCTCGAGCTCTTAAT-TCTT 448420 Query 137939 CGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGA 137998 | || ||| | ||||||| ||||| ||||||||| | |||||| ||||| | Sbjct 448419 CTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGCTCTA 448360 Query 137999 TATAGACGGCCATAGCTCCTTTTCTTTT---ACCGCCTTGATCCACAT 138043 |||| || || | || |||||||||||| || |||||||| |||| Sbjct 448359 TATATACTGCAAAAGATCCTTTTCTTTTCCCTCCACCTTGATCTACAT 448312 >seq3 Length=1724855 Score = 149 bits (164), Expect = 6e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 25159 TTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGAT 25218 |||| ||| | || |||||| | |||||||||||||||||||||||| | ||||| | Sbjct 1545594 TTTTACATTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCT 1545535 Query 25219 CGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGG 25278 || || ||| | ||||||||| || | || ||| ||||||| |||||||| || Sbjct 1545534 TGATGTTGAACCATCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGG 1545475 Query 25279 TATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA 25338 || || || || || |||||||| |||| | || |||||| | ||||||| |||| Sbjct 1545474 AATTCCCCCTGACCAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAAC 1545415 Query 25339 TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | | ||||| ||||||||||||||||| ||| | ||||| || Sbjct 1545414 TTTATCTGATTATAATATTCAAAAAGAATCAACCTTACATTTGGT 1545370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091740560960