Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq11 134 1e-26 seq3 123 2e-23 >seq11 Length=923120 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| |||||||| ||||| || ||||| || | || ||||| | Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| ||||||| || |||||||| | ||| ||||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406391 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || ||||||||||||||| | ||| | ||||| || Sbjct 406392 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406451 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || ||||||| || || || ||| ||||||| Sbjct 406452 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGG 406498 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| |||||||| ||||| || ||||| || | || ||||| | Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| ||||||| || |||||||| | ||| ||||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406163 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || ||||||||||||||| | ||| | ||||| || Sbjct 406164 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406223 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || ||||||| || || || ||| |||| || Sbjct 406224 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGG 406270 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 106311 GAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCC 106370 ||||| |||| || ||| | || ||| ||||||| || |||||||| | ||| Sbjct 405867 GAACCATCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCC 405926 Query 106371 GTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGC 106430 |||||||||||| | |||| ||| || ||||||||||||||| | ||| | Sbjct 405927 CCTGATCAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCT 405986 Query 106431 GATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| || || ||||||||||| || ||||||| || || || ||| |||| || Sbjct 405987 GATTATAATATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGG 406042 >seq3 Length=1724855 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 ||||||||||| ||||| |||||||| || || || || || || | || ||||| Sbjct 1545581 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1545522 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 |||| || ||| | || ||| ||||||| || |||||||| | ||| ||| Sbjct 1545521 TCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGAC 1545462 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||||| || |||| ||| || ||||||||||||||| | |||| | ||||| Sbjct 1545461 CAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTAT 1545402 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTA 106469 || || ||||||||||| || ||||||| ||| Sbjct 1545401 AATATTCAAAAAGAATCAACCTTACATTTGGTA 1545369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402327256178624