Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq6 109 8e-19 >seq6 Length=2450810 Score = 109 bits (120), Expect = 8e-19 Identities = 191/278 (69%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 || ||||| | ||||||||| || || |||||||| ||| | |||||| || | || Sbjct 862092 GCATTAATATTTGGTATAACAGGACAAGATGGATCATATTTGAGTGAACTACTTTTAGAG 862033 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATC 161083 || || |||||||| || || ||||| | ||| | ||||||||| |||||| Sbjct 862032 AAAGGATATGAAGTTCACGGGGTTATTAGGAGATGTAGTACATTTAATACAAAAAGAATA 861973 Query 161084 GATCATATCTTCGATCAGTTACACCTCCACTACGGGGATTTGACTGACTCCCTGAACATA 161143 |||||||| || ||| | ||| | | || || || ||| | ||| || ||| Sbjct 861972 GATCATATATTTGATAAATTAAATTTACATTATGGTGATCTACTTGATAATAGTAATATA 861913 Query 161144 GTCTCTATCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCAT 161203 | ||| | || || || |||| |||| || || || ||| ||||| |||||| Sbjct 861912 TTTTCTTTAATATCTAAAATAAAACCAAATGAAATATATAATTTAGCTGCACAAAGTCAT 861853 Query 161204 GTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACA 161241 || ||||| ||| || |||||||||||||||||| Sbjct 861852 GTAAAAGTGAGTTTTGAATTACCTGAATATACAGCACA 861815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729925238670640