Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11 488 8e-133 seq2 264 2e-65 >seq11 Length=923120 Score = 488 bits (540), Expect = 8e-133 Identities = 1140/1701 (67%), Gaps = 44/1701 (3%) Strand=Plus/Minus Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| ||||| | || | || || ||||| | |||||| ||||||| |||||| Sbjct 449575 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 449516 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG---GCTCGTATTTTGAATGGAT 68631 |||| ||| ||| | | | ||| | || | || | ||| ||| ||| | | Sbjct 449515 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATATATTGGACACTT 449456 Query 68632 CCACCATCGGATAT-AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 ||| | | || |||| | | || || || |||| |||||| ||| || | Sbjct 449455 CCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAAG 449397 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | || | | | ||| ||||| || | ||||| ||| ||| || | | | ||| Sbjct 449396 ATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGTA 449337 Query 68751 AATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGC 68810 ||| ||||| ||||||||||| | ||||||||||||||||| |||||| | |||||| || Sbjct 449336 AATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGC 449277 Query 68811 AGTTGGCATAGGTGCCACCAATAAACT--ATTTCTAAGACCATGTGTTATGATTTTATCT 68868 |||||||||||||| | || || | |||||| | |||||| | | ||||| | | Sbjct 449276 TGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTT 449219 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAA---CATTCCAAAGATCGTATTGT 68925 |||| | |||||||||| | | ||| ||||||| | ||| ||||| Sbjct 449218 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 449159 Query 68926 AGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCT 68985 | ||||| | ||||| || ||||||| |||||| || || | || ||| Sbjct 449158 AATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGTGCT 449099 Query 68986 AGTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGA 69043 | |||| || || | ||||| || | ||||| ||||| || || || | ||||| | Sbjct 449098 AATTCAACAGACATT--TCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTA 449041 Query 69044 GATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATC 69103 |||| ||||| | || ||||||| |||||| ||||||| |||||| |||| Sbjct 449040 ATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATC 448981 Query 69104 CCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAG 69163 | || || || || || ||||||| ||| || |||||||| ||||||||||| ||| | Sbjct 448980 CTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATTG 448921 Query 69164 GATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG-TCC 69222 | |||||||| | || |||||||||| | ||||| | || || ||| | | || Sbjct 448920 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCA 448862 Query 69223 TTTAGTTTGAGAAAATCAAATCGTCCAT-----CTAT-AACAAACATATTCAGTGCTACA 69276 | || ||| ||||| |||| | | |||| |||||| || | ||| | Sbjct 448861 TATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATT 448802 Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 || || | ||||||||| ||||| |||| || | |||| ||||| || |||| Sbjct 448801 GAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACAT 448742 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 | ||||||||||| || || || | ||||| |||||| || || || || || Sbjct 448741 AAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCT 448682 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456 || || | ||| | || |||||||||||| ||| || | |||| ||| | Sbjct 448681 TTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAA 448622 Query 69457 ACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATATAGC 69513 | ||| | || || || | | || |||| |||||||| |||||||| | Sbjct 448621 TCTTGTGCA---AGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 448565 Query 69514 CGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAAT 69573 ||| ||||| ||||||||| ||| || || ||||||||||| |||||||| || Sbjct 448564 TTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAA 448505 Query 69574 GACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 | ||| | || || || |||| ||||||||||| ||| || | ||||| ||| | Sbjct 448504 GTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 448445 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 || | ||||| | ||| |||||| || || ||||||| | | ||| | ||| || Sbjct 448444 AATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 448385 Query 69694 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCT 69753 | |||||| ||||||||||| |||| ||||| || | ||| || ||| ||| Sbjct 448384 AAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCA 448325 Query 69754 CCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTA 69813 || ||||||| || || || || | |||| | || || | ||| |||| | |||||| Sbjct 448324 CCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTT 448265 Query 69814 GATTTACCATTTGTTCCAGAAATATAA-----CT-TCCTCTTGCGCGAATATTACTAATA 69867 ||| ||||||| ||||| ||||||| || |||||| |||| | | Sbjct 448264 GATATACCATTAGTTCCTCTAATATAAGAATTCTGACCTCTT------ATATCTTGTACA 448211 Query 69868 GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATAT 69927 | | ||||| || ||||| ||||| || | |||||| |||| ||||| ||| || Sbjct 448210 GCAACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAAT 448151 Query 69928 ATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATG 69986 ||||| || || ||| | |||| | ||| |||||||| |||||||| | | Sbjct 448150 ATACCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCG 448092 Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 | ||||| | |||||||||||| || | || || ||||| |||||| ||| | | Sbjct 448091 TGGGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAA 448032 Query 70047 ATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCAT 70106 || |||||||| | |||| ||| | ||| ||||||||| || | || | ||| Sbjct 448031 ATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCAT 447972 Query 70107 CAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 || | ||| ||||| ||||| | |||||||||| ||| || | |||||| ||| Sbjct 447971 TAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTC 447912 Query 70167 CAGAGTTTTAAACCCAAAATA 70187 | ||||||||| |||||||| Sbjct 447911 TAAAGTTTTAAATCCAAAATA 447891 >seq2 Length=1580255 Score = 264 bits (292), Expect = 2e-65 Identities = 642/960 (67%), Gaps = 32/960 (3%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAA--TGATTATCTTCTT-GTGACATAACTCCCATTTT 39327 |||||| ||| || |||||||| | || | ||||| | | |||||| || || Sbjct 1448366 TTAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTT 1448307 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||| || || |||| | ||| || || ||||| ||||| |||| || ||||| || Sbjct 1448306 TTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATC 1448247 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAA---TTCTGAAAT 39444 ||| ||| ||| ||||| | | || | | ||| | | ||||| |||| | Sbjct 1448246 CATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCT---AG 1448190 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 |||||||| ||||||||||| || ||| ||| | | |||||||||| || | Sbjct 1448189 TAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCATTCCAATTAA 1448130 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | | ||||| || || | ||| | | || | || || || ||| | | ||| Sbjct 1448129 ATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTAT 1448070 Query 39565 CGATGTT--ACTACCTCATCACTCGGTGGATGC---AATAAATGTTTAAACATTAAGCAG 39619 || || || || || || | || |||||| || | |||||||| Sbjct 1448069 --ATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATAAATTAAGCAA 1448015 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || ||| |||||| || |||||||| ||||||||||| ||| |||||| | ||| Sbjct 1448014 TTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCA 1447955 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 | | | | | ||||| | |||||| || ||| |||| |||| ||| || || Sbjct 1447954 TGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATA 1447895 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATC 39796 |||||||| |||| || |||| ||| || | || ||||||||||| ||| Sbjct 1447894 CCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAATTTGTATCATTA---ATC 1447838 Query 39797 CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 39856 || || ||||| ||||| || |||| || || |||| ||||||| || Sbjct 1447837 CATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGGAAT 1447778 Query 39857 AGAT--AATGTTT-TTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 | || || ||| || ||| ||||||| ||| |||| ||||| | |||||| || Sbjct 1447777 AAATTTAACCTTTCTTTTTCA---TCTTTAATATAATTATCGATTAATAAACTATATGTT 1447721 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || ||||| || ||||||| || || ||||| ||||| | |||||||| | ||| Sbjct 1447720 TCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTATT 1447661 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 | ||| ||| ||||| | ||||||||||| |||||||||||||| || ||| Sbjct 1447660 TCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTTGCTGCA 1447601 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCA 40093 |||||||| || |||||||| ||||||| |||||||| | ||||| | | || Sbjct 1447600 AAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAATCT 1447541 Query 40094 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTG 40153 || | ||| |||||| ||| | |||||||||||||||||| || || || || |||||| Sbjct 1447540 TTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTG 1447481 Query 40154 TACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTT 40213 || | ||||| | ||| ||||| || ||| | |||||||||| |||| ||| Sbjct 1447480 TAAAAATTCCAAACTTCAGGATATATAATAGGATGCAATGTAAATCTATTT-GATTCTTT 1447422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904695719920