Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 206 2e-48 seq9 199 3e-46 seq12 147 2e-30 >seq2 Length=1580255 Score = 206 bits (228), Expect = 2e-48 Identities = 583/877 (66%), Gaps = 35/877 (4%) Strand=Plus/Plus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 ||| ||| ||||| ||| | ||| | | ||||||||||| | || ||||||||||| Sbjct 1447448 TCCTATTATATATCCTGAAGTTTGGAATTTTTACAAAAAAGCTGAAGCTTCATTTTGGAC 1447507 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA---TTAAAACCACA 43827 ||| |||||| ||||||| | | || || | ||| ||| | ||||| | | Sbjct 1447508 AGCTGAAGAAATTGATTTATCAAGTGATTTGAAAGATT---TTGAAAAATTAAATGTAAA 1447564 Query 43828 AGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAA 43887 ||||||||||||||| ||||| || |||||||| || || || || ||||| Sbjct 1447565 TGAAAAACATTTTATAAAACATGTTTTAGCATTTTTTGCAGCAAGTGATGGAATAGTATT 1447624 Query 43888 TGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 |||||||||| |||| ||| |||||| || || |||||| | ||||| Sbjct 1447625 AGAAAATTTGGCTAGTAAATTTTTAAGAGAAGTAGAAATAATTGAAGCAAAAAAATTTTA 1447684 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 | |||||||| || | |||||||| ||||| |||| || ||| | | || |||| Sbjct 1447685 TTCTTTTCAAATAGCTGTTGAAAATATACATTCTGAAACATATAGTTTATTAATCGATAA 1447744 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAATGCGATAGAAACAGTACCTG 44066 || || ||||||| | || ||| | | || || |||| || |||| |||| | Sbjct 1447745 TTATATTAAAGATGAAAAAGA-AAGGTTAAATTTATTCCATGCTATTGAAAATATACCAG 1447803 Query 44067 CGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAG 44126 | || ||| |||||||| ||||| ||||||||| ||| | ||||||||| | Sbjct 1447804 CAATAAAAAATAAAGCATTATGGGCTGCTAAATGGATTAATGATACAAATTCTTTTGCTG 1447863 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCA 44186 || || |||| || |||| ||| ||||| || || ||| ||| ||| || | Sbjct 1447864 AAAGAATTGTGGCTAATGCATGTGTAGAAGGTATATTATTTAGTGGAAGTTTTTGTGCAA 1447923 Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246 | |||||||| || |||| | | | | ||| || || ||| ||||| ||||| | Sbjct 1447924 TTTTTTGGTTTAAAAAACAAAATAAATTACATGGTTTAACATTTAGTAATGAATTAATTA 1447983 Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA-TCTAGGAGAC 44305 | | |||||||| ||||| |||||| |||| ||| || ||| | || ||| Sbjct 1447984 GCAGAGATGAAGGTCTACATACTGATTTTAATTGC---TTAATT-TATAGTTTATTAGAA 1448039 Query 44306 GATAAGCCTTCATGTAAGA--CAATTACAGATATTGTTGTAGAGGCAGT--AA--AGATA 44359 |||| || |||| || | |||| ||| ||| ||||| || ||| | Sbjct 1448040 AATAA--ATTACCAGAAGAAGTTGTTCAAAATATAGTTAAAGAAGCAGTTGAAGTAGAGA 1448097 Query 44360 GAACAAGAATTTATGACAACAGCATTACC-TGTAAATTTAATAGGAATGAATGAACTTTT 44418 || || |||| ||| | | ||||| ||| ||||||| ||||||||| | | Sbjct 1448098 GATCATTTATTTGTGA----ATCTTTACCATGT-GATTTAATTGGAATGAATTCAAGACT 1448152 Query 44419 GATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGCGA 44475 ||| ||||||||||||| |||| ||| | |||| | ||| | || || Sbjct 1448153 TATGTCTCAATATATTGAATTTGTTGCTGATAGATTAC---TAGAATGTTTAGGGTGTTC 1448209 Query 44476 TAAACACTAT-ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCA 44534 |||| | | ||| || |||| || ||| ||| ||||| || || || |||| | Sbjct 1448210 TAAAGTTTTTCATTCTA-AAAATCCATTTAATTGGATGGATTTAATATCTTTACAAGGAA 1448268 Query 44535 AAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 ||||||| || ||||||||| | |||| ||| ||||| Sbjct 1448269 AAACAAATTTCTTTGAAAAAAGAGTTGCAGATTATCA 1448305 >seq9 Length=724727 Score = 199 bits (220), Expect = 3e-46 Identities = 413/612 (67%), Gaps = 17/612 (3%) Strand=Plus/Minus Query 19318 ATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGT 19377 || |||||||| ||| |||||||| || | | | ||||| || || || Sbjct 72390 ATCAAACAATTAGGAATAAAACATGTAAAGGGTATGATATTATATGGCCCTCCCGGGACA 72331 Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACC--TCCCAAAA 19435 || |||||| |||| || ||| || | ||||| ||| | | | | ||| |||| Sbjct 72330 GGTAAAACACTAATAGCTAGACAAATAGGTAAAACACTAA--ATGCGAGGGATCCTAAAA 72273 Query 19436 TTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGAC 19495 || | ||||| |||||||| ||||||||||||||||||||||| ||||||||| | || Sbjct 72272 TTATTAATGGACCTGAAATATTAAATAAATATGTAGGTCAATCCGAAGAAAATATTCGTA 72213 Query 19496 GTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGT--TCTTTGCA 19553 ||| ||| || || ||| |||| | |||| | || |||| | | || || Sbjct 72212 ATTTATTTAAAGATGCAGAATTAGAATATAAACAATCTGG--AGAAAATTCATTATTACA 72155 Query 19554 CATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT---------TCTGG 19604 ||||| ||| |||||||| | || ||||| ||| ||||||||| ||| | Sbjct 72154 TATTATTATATTAGATGAAATAGATGCAATTTGTCGACAAAGAGGTAGTGGCGCATCTAG 72095 Query 19605 TGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAA 19664 || || ||| |||| | | ||||||||| | | |||||| |||| || || || Sbjct 72094 TGGGTCAGGGGTAAATGATAGCATAGTCAATCAATTATTATCAAAAATAGATGGAGTAAA 72035 Query 19665 CCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGC 19724 | | |||||||| ||| | || || ||||| |||||| | || |||||||| || Sbjct 72034 CAGTTTAAATAATATATTATTAATCGGGATGACAAATAGAATAGATTTAATAGATGAAGC 71975 Query 19725 CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGG 19784 || ||| |||| ||||| || ||| || | || ||||| ||||| || || || Sbjct 71974 ATTGTTAAGACCAGGTCGATTTGAATTACATATTGAAATATCATTACCAAATAAAGAAGG 71915 Query 19785 ACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGA 19844 | | |||| ||||| || |||||| || ||| |||||||||| |||||| | Sbjct 71914 TAGAATTCAAATATTAAATATTCATACAAAAAATATGAGACAAAATAATAAATTAAATAA 71855 Query 19845 CGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGA 19904 ||||| || |||||||| | || | || ||| | | || |||||| |||| Sbjct 71854 GGATGTTAATATAGAAGAATTAGCTGAAAAAACTCCAAATTTTTCTGGTGCAGAAATTGA 71795 Query 19905 GGGATTAGTGAG 19916 |||||||| || Sbjct 71794 AGGATTAGTAAG 71783 >seq12 Length=816096 Score = 147 bits (162), Expect = 2e-30 Identities = 276/403 (68%), Gaps = 2/403 (0%) Strand=Plus/Plus Query 40868 TGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACA-CTA 40926 |||||| ||||| ||||||||||||| | | | |||||||| || ||||| ||| || Sbjct 647733 TGATCTCGGTCCAATTTATGGATTTCAATGGAGGCATTTTGGTGCTGAATAT-ACAGATA 647791 Query 40927 TGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTA 40986 || | | |||||| | |||||| | ||||||||| | ||||| || |||| Sbjct 647792 TGCATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATATTATAAATTTAATTA 647851 Query 40987 AATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATT 41046 || ||||| | | |||| || || ||||| || ||||| || || || || Sbjct 647852 AAAATGATCCTACTTGTAGACGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATC 647911 Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| || ||||||||| | |||||||| ||||| |||| | || || | | Sbjct 647912 AAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGACGGAAAATTAT 647971 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 ||||| ||||||||||||| |||| | || || ||||| || || || || || Sbjct 647972 CATGTATTATGTATCAAAGATCTTGTGATTTAGGGCTTGGGGTTCCATTCAATATTGCTT 648031 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTG 41226 ||| || | | || |||||||| ||||| || || ||| | | | ||||||| Sbjct 648032 CCTATTCTATATTTACATATATGATAGCACAAGTATGTAACTTACAGGCAGCTGAATTTA 648091 Query 41227 TTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269 | || || || ||| ||| |||| | |||||| || || Sbjct 648092 TACATGTATTGGGTAATGCTCATGTTTATAATAATCATATTGA 648134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453684570390