Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq11 122 7e-23 seq3 98.7 8e-16 >seq11 Length=923120 Score = 122 bits (134), Expect = 7e-23 Identities = 787/1244 (63%), Gaps = 36/1244 (3%) Strand=Plus/Minus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 |||||||| || | |||| ||| || |||||||| | || | || | || || ||| Sbjct 449575 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 449516 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGC-AATCGATTGAACGCT 130674 ||| | || || || | || | | || || ||||| ||| ||| |||| || || Sbjct 449515 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTT-CGCTAATATATTGGACACT 449457 Query 130675 ACCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCTGTACAA 130733 || |||| || || | || |||| |||| || ||| |||| || | | || Sbjct 449456 TCCATTGTGAGCAATTAATT-GTTGTTTCATATCTTCATCCCACAAACCTCTATCAAAAA 449398 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 ||||||||| ||||||| ||| | | || |||||| | || |||||| || Sbjct 449397 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 449338 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 ||||||| || || | |||||||| ||||| || || || || ||||||| || | | Sbjct 449337 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 449278 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCT 130913 | || ||||| ||| | | || ||||| | | || || | | |||||| | Sbjct 449277 CTGTTGGCATAGGTGCTAAAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTT 449218 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---GTTCCACATATCAAATT 130970 | ||| |||||||||||| | | || | || || |||||||||||||||| Sbjct 449217 TTAATAAATCCCAATCCCA---ATATTTATTATCTACTTTTGCATTCCACATATCAAATT 449161 Query 130971 GTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAG 131030 ||| ||| |||| || || ||||| | | ||||| || || | || | | Sbjct 449160 GTAATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGTG 449101 Query 131031 CCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTA 131090 | | || ||| ||||| | ||||| || || || ||| |||||||| Sbjct 449100 CTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTA 449041 Query 131091 ATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGAC 131150 ||| ||| |||| || || || ||| || | | | ||||| | ||||| | | Sbjct 449040 ATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATC 448981 Query 131151 CCTGTATCCCAACGCCCACCGGTCTATG--TTTTAAATTACATTTACGCGAACATTCGGT 131208 | |||| || | || | |||| ||| ||||| | | ||| || | || | Sbjct 448980 CTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGC-TTCTTTAATT 448922 Query 131209 GGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCT 131268 ||| ||| || | ||||| ||||| | |||||| | | ||||| || | Sbjct 448921 GGG-TAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 448863 Query 131269 TTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATAT 131328 | ||||| | |||| ||| |||| | ||||||| | || || Sbjct 448862 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 448803 Query 131329 TGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCA 131388 ||| |||| ||||||||| || ||| ||| | || | || ||||| || Sbjct 448802 TGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACA 448743 Query 131389 CAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GT 131447 || ||||| | || || || || ||||||| |||||| ||||| ||| |||| | Sbjct 448742 TAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATT-GCATGCAT 448684 Query 131448 CCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--A 131505 | || || | ||| || || || ||||| | |||| ||| |||| || | || | Sbjct 448683 CTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTT--GTAATATAGCAAACCA 448626 Query 131506 GAGTTTTCGAGCA--GACAATTGATATT--TGTATTGGCCGCGTTTTTCGTAATTTTCGT 131561 | | | | ||| ||| || | || | ||| | || ||| || ||| | Sbjct 448625 TAAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTC----TTCTTCATATTTTGTAT 448570 Query 131562 ACAACGTTTCAAAGT--TTTGGCCAA-ACGAACTGTCCAAATTGGGACATTCGCTGGGAC 131618 | ||| ||||||| | | | |||| | ||| ||| |||||||| | |||| Sbjct 448569 ATAACTTTTCAAATTCGTCTCCCCAAGATTCACT---TAAACCTGGACATTCATTAGGAC 448513 Query 131619 ACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATA 131678 |||||| | ||| || | || |||| |||||||| ||||| || ||||| | Sbjct 448512 ACATTAAAGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAA 448453 Query 131679 ACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-tCAAATTT 131737 || || || | ||||| |||| || |||||| || |||| ||||||| | |||| | Sbjct 448452 TAGCATAAAATAAATCTCGAGCTCTTAATTCTTCTTTA-CCATGATTTTTTCTTAAATCT 448394 Query 131738 AAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 ||||| || ||||| || | |||||| || || | ||| ||||| Sbjct 448393 AAAAATTCAAAAATATCTGAATGCCATGGCTCTATATATACTGC 448350 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || ||||||||||| || || |||||||||||||| || || | | ||||| || | || Sbjct 406255 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGC-CATC 406197 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || |||| | | |||||||| || || | ||| |||||||| Sbjct 406196 TTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATC 406137 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | |||| | ||| || | | ||| || || |||||||| | Sbjct 406136 TTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGT 406077 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || | ||||| ||||| || |||||| Sbjct 406076 TTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 406043 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || ||||||||||| || || |||||||||||||| || || | | ||||| || | || Sbjct 406483 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGC-CATC 406425 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || |||| | | |||||||| || || | ||| |||||||| Sbjct 406424 TTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATC 406365 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | |||| | ||| || | | ||| || || |||||||| | Sbjct 406364 TTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGT 406305 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || | ||||| ||||| || |||||| Sbjct 406304 TTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 406271 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || ||||||||||| || || |||||||||||||| || || | | ||||| || | || Sbjct 406027 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGC-CATC 405969 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || |||| | | |||||||| || || | ||| |||||||| Sbjct 405968 TTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATC 405909 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | |||| | ||| || | | ||| || || |||||||||| Sbjct 405908 TTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATAGT 405849 Query 27215 TTTGCC 27220 ||| || Sbjct 405848 TTTTCC 405843 >seq3 Length=1724855 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||||||||| || || |||||||||||||| || || | | | ||| || | |||| Sbjct 1545369 TACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGC-CATCTT 1545427 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | ||||| || || |||| || | ||||| || || || | || |||||||| Sbjct 1545428 CTAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTT 1545487 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || || ||| | |||| | ||| || | | |||||| || ||||| || | || Sbjct 1545488 GAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTT 1545547 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| |||||||||||||| Sbjct 1545548 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1545578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931924491536